11 items (Charadrius vociferus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N301_10598	Nidogen-1. (1204 aa)
	N301_06003	Low-density lipoprotein receptor-related protein 1. (285 aa)
	N301_00859	Low-density lipoprotein receptor-related protein 1B. (4539 aa)
	N301_15838	Sortilin-related receptor. (2109 aa)
	N301_05546	Tyrosine-protein kinase receptor. (2314 aa)
	N301_03102	Low-density lipoprotein receptor-related protein 2. (4629 aa)
	N301_00979	Low-density lipoprotein receptor-related protein 4. (1885 aa)
	N301_16304	Low-density lipoprotein receptor-related protein 6. (1594 aa)
	N301_12549	Pro-epidermal growth factor. (1254 aa)
	N301_03273	Low-density lipoprotein receptor-related protein 8. (856 aa)
	N301_11145	Low-density lipoprotein receptor-related protein 5. (1545 aa)

Your Current Organism:

Charadrius vociferus

NCBI taxonomy Id: 50402
Other names: Aegialitis vocifera, C. vociferus, Charadrius vociferous, Oxyechus vociferus, killdeer

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N301_00859	N301_00979	A0A0A0AXG8	A0A0A0A376	Low-density lipoprotein receptor-related protein 1B.	Low-density lipoprotein receptor-related protein 4.	0.593
N301_00859	N301_03102	A0A0A0AXG8	A0A0A0A0X6	Low-density lipoprotein receptor-related protein 1B.	Low-density lipoprotein receptor-related protein 2.	0.593
N301_00859	N301_05546	A0A0A0AXG8	A0A099ZYZ0	Low-density lipoprotein receptor-related protein 1B.	Tyrosine-protein kinase receptor.	0.409
N301_00979	N301_00859	A0A0A0A376	A0A0A0AXG8	Low-density lipoprotein receptor-related protein 4.	Low-density lipoprotein receptor-related protein 1B.	0.593
N301_00979	N301_03273	A0A0A0A376	A0A0A0AIS5	Low-density lipoprotein receptor-related protein 4.	Low-density lipoprotein receptor-related protein 8.	0.491
N301_00979	N301_06003	A0A0A0A376	A0A099ZUM9	Low-density lipoprotein receptor-related protein 4.	Low-density lipoprotein receptor-related protein 1.	0.593
N301_00979	N301_12549	A0A0A0A376	A0A0A0AGQ3	Low-density lipoprotein receptor-related protein 4.	Pro-epidermal growth factor.	0.569
N301_03102	N301_00859	A0A0A0A0X6	A0A0A0AXG8	Low-density lipoprotein receptor-related protein 2.	Low-density lipoprotein receptor-related protein 1B.	0.593
N301_03102	N301_03273	A0A0A0A0X6	A0A0A0AIS5	Low-density lipoprotein receptor-related protein 2.	Low-density lipoprotein receptor-related protein 8.	0.491
N301_03102	N301_06003	A0A0A0A0X6	A0A099ZUM9	Low-density lipoprotein receptor-related protein 2.	Low-density lipoprotein receptor-related protein 1.	0.593
N301_03102	N301_12549	A0A0A0A0X6	A0A0A0AGQ3	Low-density lipoprotein receptor-related protein 2.	Pro-epidermal growth factor.	0.569
N301_03273	N301_00979	A0A0A0AIS5	A0A0A0A376	Low-density lipoprotein receptor-related protein 8.	Low-density lipoprotein receptor-related protein 4.	0.491
N301_03273	N301_03102	A0A0A0AIS5	A0A0A0A0X6	Low-density lipoprotein receptor-related protein 8.	Low-density lipoprotein receptor-related protein 2.	0.491
N301_03273	N301_12549	A0A0A0AIS5	A0A0A0AGQ3	Low-density lipoprotein receptor-related protein 8.	Pro-epidermal growth factor.	0.533
N301_05546	N301_00859	A0A099ZYZ0	A0A0A0AXG8	Tyrosine-protein kinase receptor.	Low-density lipoprotein receptor-related protein 1B.	0.409
N301_05546	N301_06003	A0A099ZYZ0	A0A099ZUM9	Tyrosine-protein kinase receptor.	Low-density lipoprotein receptor-related protein 1.	0.409
N301_05546	N301_12549	A0A099ZYZ0	A0A0A0AGQ3	Tyrosine-protein kinase receptor.	Pro-epidermal growth factor.	0.424
N301_05546	N301_15838	A0A099ZYZ0	A0A0A0AV75	Tyrosine-protein kinase receptor.	Sortilin-related receptor.	0.430
N301_06003	N301_00979	A0A099ZUM9	A0A0A0A376	Low-density lipoprotein receptor-related protein 1.	Low-density lipoprotein receptor-related protein 4.	0.593
N301_06003	N301_03102	A0A099ZUM9	A0A0A0A0X6	Low-density lipoprotein receptor-related protein 1.	Low-density lipoprotein receptor-related protein 2.	0.593