STRINGSTRING
N301_03524 N301_03524 N301_09150 N301_09150 N301_01633 N301_01633 N301_02080 N301_02080 N301_10933 N301_10933 N301_02177 N301_02177 N301_02200 N301_02200 LSM5 LSM5 N301_09950 N301_09950 N301_16119 N301_16119 N301_16120 N301_16120 N301_11552 N301_11552 N301_10809 N301_10809 N301_02761 N301_02761 N301_07574 N301_07574 N301_02199 N301_02199 N301_11868 N301_11868 N301_06653 N301_06653 N301_05214 N301_05214 N301_16005 N301_16005 N301_15332 N301_15332 N301_00796 N301_00796 N301_14482 N301_14482 N301_06613 N301_06613 N301_16007 N301_16007 N301_14213 N301_14213 N301_06652 N301_06652 N301_05213 N301_05213 LSM3 LSM3 N301_15843 N301_15843 N301_02431 N301_02431 N301_00074 N301_00074 N301_14806 N301_14806 N301_07615 N301_07615 N301_09846 N301_09846 N301_08804 N301_08804 N301_05445 N301_05445 N301_15040 N301_15040 N301_15713 N301_15713 N301_15103 N301_15103 N301_00853 N301_00853 N301_08362 N301_08362 N301_02055 N301_02055 N301_03931 N301_03931 N301_12189 N301_12189 N301_02686 N301_02686 N301_09420 N301_09420 N301_10040 N301_10040 LSM4 LSM4 N301_15551 N301_15551 N301_07375 N301_07375 N301_06140 N301_06140 N301_01832 N301_01832 N301_11033 N301_11033 N301_02048 N301_02048 N301_09440 N301_09440 N301_09651 N301_09651 N301_06205 N301_06205 N301_02050 N301_02050 N301_07674 N301_07674 N301_13183 N301_13183 N301_01275 N301_01275 N301_08984 N301_08984 N301_16783 N301_16783 N301_16794 N301_16794 N301_06153 N301_06153 N301_06443 N301_06443 N301_14072 N301_14072 N301_05925 N301_05925 N301_13553 N301_13553 N301_11912 N301_11912 N301_14649 N301_14649 N301_13511 N301_13511 N301_07245 N301_07245 N301_05918 N301_05918 N301_08669 N301_08669 N301_05798 N301_05798 N301_08080 N301_08080 N301_11947 N301_11947 N301_05554 N301_05554 N301_15601 N301_15601 N301_11111 N301_11111 N301_13747 N301_13747 N301_06750 N301_06750 N301_14565 N301_14565 N301_05900 N301_05900 N301_07778 N301_07778 N301_09484 N301_09484 N301_13683 N301_13683 N301_13716 N301_13716 N301_06456 N301_06456 N301_06471 N301_06471 N301_07089 N301_07089 N301_12859 N301_12859 N301_01395 N301_01395 N301_09320 N301_09320 N301_01309 N301_01309 N301_12664 N301_12664 N301_13087 N301_13087 N301_15900 N301_15900 N301_12229 N301_12229 N301_02003 N301_02003 N301_11258 N301_11258 N301_05670 N301_05670 N301_15969 N301_15969 N301_08026 N301_08026 N301_13001 N301_13001 N301_09294 N301_09294 N301_14053 N301_14053 N301_14839 N301_14839 N301_01960 N301_01960 N301_04398 N301_04398 N301_13554 N301_13554 N301_00600 N301_00600 N301_09269 N301_09269 N301_11801 N301_11801 N301_11103 N301_11103 N301_05508 N301_05508 N301_00096 N301_00096 N301_10171 N301_10171 N301_13616 N301_13616 N301_07954 N301_07954 N301_16709 N301_16709 N301_12663 N301_12663 N301_07920 N301_07920 N301_13629 N301_13629 N301_07028 N301_07028 N301_07069 N301_07069 N301_15273 N301_15273 N301_11219 N301_11219 N301_01623 N301_01623 N301_16514 N301_16514 N301_05718 N301_05718 N301_05199 N301_05199 N301_08606 N301_08606 N301_10588 N301_10588 N301_12386 N301_12386 N301_09494 N301_09494 N301_04088 N301_04088 N301_04114 N301_04114 N301_10242 N301_10242 N301_04300 N301_04300 N301_03551 N301_03551 N301_01062 N301_01062 LSM8 LSM8 N301_03264 N301_03264 N301_03274 N301_03274 N301_03265 N301_03265 N301_03275 N301_03275 N301_03285 N301_03285 N301_03509 N301_03509 N301_03515 N301_03515 N301_03532 N301_03532 N301_01430 N301_01430 N301_01119 N301_01119 N301_12360 N301_12360 N301_01922 N301_01922 N301_01431 N301_01431 N301_05415 N301_05415 N301_03765 N301_03765 N301_12399 N301_12399
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
N301_03524Pre-mRNA-splicing factor 38B. (449 aa)
N301_09150Myelin expression factor 2. (553 aa)
N301_01633WD repeat-containing protein 53. (354 aa)
N301_02080Intron-binding protein aquarius. (1358 aa)
N301_10933Crooked neck-like 1. (679 aa)
N301_02177G patch domain-containing protein 2-like. (479 aa)
N301_02200SNW domain-containing protein 1. (538 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (76 aa)
N301_09950Transformer-2 protein beta. (251 aa)
N301_16119Heterogeneous nuclear ribonucleoprotein D0. (278 aa)
N301_16120Heterogeneous nuclear ribonucleoprotein D-like. (271 aa)
N301_11552R3H and coiled-coil domain-containing protein 1-like. (270 aa)
N301_10809THO complex subunit 1. (655 aa)
N301_02761Transmembrane protein 59. (257 aa)
N301_07574Transmembrane anterior posterior transformation protein 1. (501 aa)
N301_02199Uncharacterized protein. (55 aa)
N301_11868U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2. (460 aa)
N301_06653UHRF1-binding protein 1. (313 aa)
N301_05214Small nuclear ribonucleoprotein G. (60 aa)
N301_16005Lethal(3)malignant brain tumor-like 3. (376 aa)
N301_15332Protein BUD31. (144 aa)
N301_00796Pre-mRNA-splicing factor SPF27. (164 aa)
N301_14482THO complex subunit 2. (1521 aa)
N301_06613Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (74 aa)
N301_16007Serine/arginine-rich splicing factor 4. (446 aa)
N301_14213Pre-mRNA-splicing factor ISY1. (219 aa)
N301_06652U1 small nuclear ribonucleoprotein C. (157 aa)
N301_05213Nucleolysin TIA-1 isoform p40. (339 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
N301_15843Heat shock cognate 71 kDa protein; Belongs to the heat shock protein 70 family. (647 aa)
N301_02431Splicing factor 3B subunit 1. (1292 aa)
N301_00074RNA-binding protein 4. (138 aa)
N301_14806Nuclease-sensitive element-binding protein 1. (248 aa)
N301_07615Heat shock 70 kDa protein; Belongs to the heat shock protein 70 family. (634 aa)
N301_09846U4/U6 small nuclear ribonucleoprotein Prp4. (508 aa)
N301_08804Zinc finger protein 804B. (1315 aa)
N301_05445WD repeat-containing protein 25. (327 aa)
N301_15040RNA-binding protein 5. (740 aa)
N301_15713Zinc finger matrin-type protein 2. (193 aa)
N301_15103RNA-binding protein 6. (1095 aa)
N301_00853Ubiquitin-associated protein 2-like. (57 aa)
N301_08362Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (149 aa)
N301_02055Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family. (350 aa)
N301_03931U6 snRNA-associated Sm-like LSm6. (80 aa)
N301_12189Pre-mRNA-splicing factor RBM22. (402 aa)
N301_02686RNA-binding Raly-like. (205 aa)
N301_09420Transcription elongation regulator 1-like. (475 aa)
N301_10040RNA-binding protein Raly. (268 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (138 aa)
N301_15551Serine/arginine-rich splicing factor 3. (164 aa)
N301_07375Splicing factor U2AF 35 kDa subunit. (178 aa)
N301_06140Beta-catenin-like 1. (564 aa)
N301_01832Germ cell-less protein-like 1. (429 aa)
N301_11033U5 small nuclear ribonucleoprotein 40 kDa protein. (313 aa)
N301_02048Serine/arginine-rich splicing factor 7. (148 aa)
N301_09440Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32. (761 aa)
N301_09651Transcriptional adapter 1. (311 aa)
N301_06205Pre-mRNA-processing factor 6. (917 aa)
N301_02050Serine/arginine-rich splicing factor 7. (241 aa)
N301_07674Heterogeneous nuclear ribonucleoprotein U. (604 aa)
N301_13183Pleiotropic regulator 1. (513 aa)
N301_01275Scaffold attachment factor B1. (879 aa)
N301_08984Pre-mRNA-processing factor 17. (520 aa)
N301_16783Small nuclear ribonucleoprotein Sm D3. (126 aa)
N301_16794ATP-dependent RNA helicase DDX51; Belongs to the DEAD box helicase family. (577 aa)
N301_06153Microtubule-associated protein RP/EB family member 1. (263 aa)
N301_06443G patch domain-containing protein 2. (488 aa)
N301_14072U2 snRNP-associated SURP motif-containing protein. (973 aa)
N301_05925PHD finger-like domain-containing protein 5A. (93 aa)
N301_13553Nucleolar RNA helicase 2. (288 aa)
N301_11912Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
N301_14649Uncharacterized protein. (89 aa)
N301_13511WW domain-containing adapter protein with coiled-coil. (604 aa)
N301_07245Calcium homeostasis endoplasmic reticulum protein. (842 aa)
N301_05918Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (127 aa)
N301_08669Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16. (1224 aa)
N301_05798Splicing factor 3B subunit 4. (407 aa)
N301_08080Putative ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family. (607 aa)
N301_11947Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
N301_05554E3 ubiquitin-protein ligase Topors. (844 aa)
N301_15601Lethal(3)malignant brain tumor-like 3. (291 aa)
N301_11111Poly(U)-binding-splicing factor PUF60. (522 aa)
N301_13747BTB/POZ domain-containing protein 9. (647 aa)
N301_06750Complex III assembly factor LYRM7; Belongs to the complex I LYR family. (75 aa)
N301_14565U6 snRNA-associated Sm-like LSm7. (100 aa)
N301_05900Polymerase delta-interacting protein 3. (388 aa)
N301_07778Cell division cycle 5-like. (803 aa)
N301_09484Small nuclear ribonucleoprotein Sm D2. (60 aa)
N301_13683Zinc transporter 6. (459 aa)
N301_13716Zinc finger protein 318. (1290 aa)
N301_06456Heterogeneous nuclear ribonucleoproteins A2/B1. (339 aa)
N301_06471Transformer-2 protein alpha. (258 aa)
N301_07089Nucleolysin TIAR. (378 aa)
N301_12859Splicing factor 3A subunit 3. (442 aa)
N301_01395Coiled-coil domain-containing protein 12. (111 aa)
N301_09320THO complex subunit 4. (144 aa)
N301_01309Nuclear cap-binding protein subunit 1. (496 aa)
N301_12664Tudor domain-containing protein 12. (105 aa)
N301_13087U2 small nuclear ribonucleoprotein B. (214 aa)
N301_15900Pre-mRNA-processing factor 19. (498 aa)
N301_12229Transcription elongation regulator 1-like. (1010 aa)
N301_02003U4/U6.U5 tri-snRNP-associated protein 2. (334 aa)
N301_11258Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (108 aa)
N301_05670Nuclear cap-binding protein subunit 1. (754 aa)
N301_15969WW domain-binding protein 11. (650 aa)
N301_08026Putative ATP-dependent RNA helicase DHX35. (691 aa)
N301_13001U4/U6 small nuclear ribonucleoprotein Prp3. (684 aa)
N301_09294Heterogeneous nuclear ribonucleoprotein A/B. (263 aa)
N301_14053Dynein assembly factor with WDR repeat domains 1. (402 aa)
N301_14839ATP-dependent RNA helicase DHX8. (598 aa)
N301_01960Zinc finger matrin-type protein 5. (170 aa)
N301_04398U2 small nuclear ribonucleoprotein A. (228 aa)
N301_13554Nucleolar RNA helicase 2. (283 aa)
N301_00600Transcription factor SOX-30. (515 aa)
N301_09269Putative ATP-dependent RNA helicase DDX46. (997 aa)
N301_11801RNA-binding protein 25. (831 aa)
N301_11103Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (96 aa)
N301_05508Microtubule-associated protein RP/EB family member 2. (265 aa)
N301_00096Spliceosome-associated protein CWC15. (230 aa)
N301_10171Putative ATP-dependent RNA helicase DDX17; Belongs to the DEAD box helicase family. (495 aa)
N301_13616Pre-mRNA-splicing factor syf2. (199 aa)
N301_07954Splicing factor 45. (401 aa)
N301_16709Splicing factor 3B subunit 3. (1217 aa)
N301_12663Tudor domain-containing protein 12. (654 aa)
N301_07920Pre-mRNA-splicing factor 18. (320 aa)
N301_13629Serine/arginine-rich splicing factor 10. (246 aa)
N301_07028Survival of motor neuron-related-splicing factor 30. (238 aa)
N301_07069Heat shock 70 kDa protein 12A. (657 aa)
N301_15273Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (166 aa)
N301_11219RNA-binding motif protein, X chromosome. (388 aa)
N301_01623116 kDa U5 small nuclear ribonucleoprotein component. (938 aa)
N301_16514Phosducin-like 3. (238 aa)
N301_05718RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (152 aa)
N301_05199Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (63 aa)
N301_08606Serine/arginine-rich splicing factor 4. (260 aa)
N301_10588Pre-mRNA-processing factor 40 A. (884 aa)
N301_12386Heat shock 70 kDa protein 12B. (619 aa)
N301_09494R3H and coiled-coil domain-containing protein 1. (422 aa)
N301_04088Zinc transporter 5. (770 aa)
N301_04114Angiogenic factor with G patch and FHA domains 1. (645 aa)
N301_10242Heat shock 70 kDa protein 13. (462 aa)
N301_04300U5 small nuclear ribonucleoprotein 200 kDa helicase. (124 aa)
N301_03551Zinc finger protein 804A. (1190 aa)
N301_01062Heterogeneous nuclear ribonucleoprotein M. (670 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (88 aa)
N301_03264Transmembrane protein 59. (331 aa)
N301_03274Protein mago nashi 2. (146 aa)
N301_03265Low-density lipoprotein receptor class A domain-containing protein 1. (136 aa)
N301_03275UPF0587 protein C1orf123. (171 aa)
N301_03285Pre-mRNA-splicing factor 38A. (312 aa)
N301_03509Zinc transporter 7. (312 aa)
N301_03515RNA-binding protein 40. (449 aa)
N301_03532Putative ATP-dependent RNA helicase DDX59. (624 aa)
N301_01430Splicing factor 3A subunit 2. (205 aa)
N301_01119Ubiquitin-associated protein 2. (903 aa)
N301_12360Pre-mRNA-processing-splicing factor 8. (2302 aa)
N301_01922Phosducin-like 2. (216 aa)
N301_01431Uncharacterized protein. (111 aa)
N301_05415Serine/arginine-rich splicing factor 6. (276 aa)
N301_03765Pre-mRNA branch site protein p14. (125 aa)
N301_12399Retinitis pigmentosa 9 protein. (150 aa)
Your Current Organism:
Charadrius vociferus
NCBI taxonomy Id: 50402
Other names: Aegialitis vocifera, C. vociferus, Charadrius vociferous, Oxyechus vociferus, killdeer
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