(46 nodes) SNARE interactions in vesicular transport network (Charadrius vociferus)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:
	N301_11787	Mediator of RNA polymerase II transcription subunit 6. (239 aa)
	N301_02951	Uncharacterized protein. (101 aa)
	N301_07388	Syntaxin-1B. (194 aa)
	N301_16436	Citron Rho-interacting kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. (2049 aa)
	N301_08564	Synaptosomal-associated protein; Belongs to the SNAP-25 family. (209 aa)
	N301_08308	Synaptosomal-associated protein 29. (206 aa)
	N301_06817	t-SNARE domain-containing protein 1. (185 aa)
	N301_11596	Syntaxin-19; Belongs to the syntaxin family. (291 aa)
	N301_13902	Syntaxin-1A; Belongs to the syntaxin family. (284 aa)
	N301_12494	PHD finger protein 19. (265 aa)
	N301_02620	Uncharacterized protein. (346 aa)
	N301_09658	Vesicle-associated membrane protein 4. (86 aa)
	N301_08262	Syntaxin-2; Belongs to the syntaxin family. (280 aa)
	N301_13051	Pescadillo. (547 aa)
	N301_12493	PHD finger protein 19. (149 aa)
	N301_09636	Vesicle-trafficking protein SEC22b; Belongs to the synaptobrevin family. (87 aa)
	N301_00002	Vesicle-associated membrane protein 3. (43 aa)
	N301_15195	Golgi SNAP receptor complex member 2. (204 aa)
	N301_06267	Putative aminopeptidase NPEPL1. (476 aa)
	N301_06268	Syntaxin-16. (275 aa)
	N301_09697	Syntaxin-6; Belongs to the syntaxin family. (239 aa)
	N301_09552	Vesicle-trafficking protein SEC22a; Belongs to the synaptobrevin family. (308 aa)
	N301_10995	Synaptosomal-associated protein; Belongs to the SNAP-25 family. (146 aa)
	N301_04532	Syntaxin-17. (301 aa)
	N301_15294	Vesicle-associated membrane protein 3. (97 aa)
	N301_12576	Integrator complex subunit 12. (463 aa)
	N301_03468	Metal-response element-binding transcription factor 2. (599 aa)
	N301_08596	Vesicle transport through interaction with t-SNAREs 1B. (197 aa)
	N301_15293	Calmodulin-binding transcription activator 1. (1572 aa)
	N301_00835	Synaptobrevin YKT6-B; Belongs to the synaptobrevin family. (156 aa)
	N301_07416	Vesicle transport protein SEC20. (170 aa)
	N301_07043	Vesicle transport through interaction with t-SNAREs 1A. (113 aa)
	N301_15906	Syntaxin-3. (265 aa)
	N301_13915	Vesicle-associated membrane protein 3. (55 aa)
	N301_16073	Uncharacterized protein. (359 aa)
	N301_12247	Syntaxin-8. (211 aa)
	N301_01388	Synaptosomal-associated protein 47. (420 aa)
	N301_13020	Vesicle-associated membrane protein 7; Belongs to the synaptobrevin family. (220 aa)
	N301_16214	Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1. (473 aa)
	N301_13432	Syntaxin-18. (279 aa)
	N301_01365	Vesicle-trafficking protein SEC22c; Belongs to the synaptobrevin family. (304 aa)
	N301_07727	BET1. (110 aa)
	N301_15239	Golgi SNAP receptor complex member 1. (233 aa)
	N301_02315	Syntaxin-11. (287 aa)
	N301_07496	Synaptobrevin. (110 aa)
	N301_05538	Histone chaperone ASF1. (204 aa)

Your Current Organism:

Charadrius vociferus

NCBI taxonomy Id: 50402
Other names: Aegialitis vocifera, C. vociferus, Charadrius vociferous, Oxyechus vociferus, killdeer

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N301_00002	N301_00835	A0A0A0B0M4	A0A0A0ABW1	Vesicle-associated membrane protein 3.	Synaptobrevin YKT6-B; Belongs to the synaptobrevin family.	0.511
N301_00002	N301_01388	A0A0A0B0M4	A0A0A0A7Z7	Vesicle-associated membrane protein 3.	Synaptosomal-associated protein 47.	0.794
N301_00002	N301_02315	A0A0A0B0M4	A0A0A0A2W4	Vesicle-associated membrane protein 3.	Syntaxin-11.	0.761
N301_00002	N301_02951	A0A0A0B0M4	A0A099ZX30	Vesicle-associated membrane protein 3.	Uncharacterized protein.	0.761
N301_00002	N301_04532	A0A0A0B0M4	A0A0A0AHT6	Vesicle-associated membrane protein 3.	Syntaxin-17.	0.734
N301_00002	N301_06268	A0A0A0B0M4	A0A0A0B1Q9	Vesicle-associated membrane protein 3.	Syntaxin-16.	0.839
N301_00002	N301_06817	A0A0A0B0M4	A0A0A0AS04	Vesicle-associated membrane protein 3.	t-SNARE domain-containing protein 1.	0.734
N301_00002	N301_07043	A0A0A0B0M4	A0A0A0AAI9	Vesicle-associated membrane protein 3.	Vesicle transport through interaction with t-SNAREs 1A.	0.850
N301_00002	N301_07388	A0A0A0B0M4	A0A099ZWW7	Vesicle-associated membrane protein 3.	Syntaxin-1B.	0.761
N301_00002	N301_07727	A0A0A0B0M4	A0A0A0A4A3	Vesicle-associated membrane protein 3.	BET1.	0.714
N301_00002	N301_08262	A0A0A0B0M4	A0A0A0AMS0	Vesicle-associated membrane protein 3.	Syntaxin-2; Belongs to the syntaxin family.	0.761
N301_00002	N301_08308	A0A0A0B0M4	A0A0A0ARY7	Vesicle-associated membrane protein 3.	Synaptosomal-associated protein 29.	0.794
N301_00002	N301_08564	A0A0A0B0M4	A0A0A0ANY5	Vesicle-associated membrane protein 3.	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.794
N301_00002	N301_08596	A0A0A0B0M4	A0A0A0AF16	Vesicle-associated membrane protein 3.	Vesicle transport through interaction with t-SNAREs 1B.	0.850
N301_00002	N301_09697	A0A0A0B0M4	A0A0A0AYF5	Vesicle-associated membrane protein 3.	Syntaxin-6; Belongs to the syntaxin family.	0.836
N301_00002	N301_10995	A0A0A0B0M4	A0A0A0AJX2	Vesicle-associated membrane protein 3.	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.794
N301_00002	N301_11596	A0A0A0B0M4	A0A0A0ASR4	Vesicle-associated membrane protein 3.	Syntaxin-19; Belongs to the syntaxin family.	0.753
N301_00002	N301_12247	A0A0A0B0M4	A0A0A0A862	Vesicle-associated membrane protein 3.	Syntaxin-8.	0.836
N301_00002	N301_13020	A0A0A0B0M4	A0A0A0A7D4	Vesicle-associated membrane protein 3.	Vesicle-associated membrane protein 7; Belongs to the synaptobrevin family.	0.634
N301_00002	N301_13432	A0A0A0B0M4	A0A0A0A4S3	Vesicle-associated membrane protein 3.	Syntaxin-18.	0.471