STRINGSTRING
Slin_0906 Slin_0906 Slin_0907 Slin_0907 Slin_1087 Slin_1087 Slin_1492 Slin_1492 Slin_1709 Slin_1709 Slin_1710 Slin_1710 Slin_1711 Slin_1711 Slin_1713 Slin_1713 Slin_1714 Slin_1714 Slin_2121 Slin_2121 Slin_2123 Slin_2123 Slin_2706 Slin_2706 Slin_2707 Slin_2707 Slin_2708 Slin_2708 Slin_2709 Slin_2709 Slin_2712 Slin_2712 Slin_2713 Slin_2713 Slin_2714 Slin_2714 Slin_2783 Slin_2783 Slin_3161 Slin_3161 Slin_3162 Slin_3162 Slin_3163 Slin_3163 Slin_3165 Slin_3165 Slin_3166 Slin_3166 Slin_3412 Slin_3412 Slin_3413 Slin_3413 Slin_3414 Slin_3414 Slin_3556 Slin_3556 Slin_4046 Slin_4046 Slin_4047 Slin_4047 kptA kptA Slin_4049 Slin_4049 Slin_4050 Slin_4050
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Slin_0906KEGG: esa:ESA_01404 hypothetical protein. (192 aa)
Slin_0907Hypothetical protein. (72 aa)
Slin_1087PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: saz:Sama_3558 peptidase S8 and S53, subtilisin, kexin, sedolisin. (466 aa)
Slin_1492PFAM: protein of unknown function UPF0027; KEGG: pca:Pcar_2835 hypothetical protein. (512 aa)
Slin_1709Hypothetical protein. (179 aa)
Slin_1710PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: swd:Swoo_3530 peptidase S8 and S53 subtilisin kexin sedolisin. (396 aa)
Slin_1711Hypothetical protein. (612 aa)
Slin_1713TIGRFAM: luciferase family oxidoreductase, group 1; PFAM: Luciferase-like, subgroup; KEGG: mxa:MXAN_5094 luciferase-like monooxygenase family protein. (338 aa)
Slin_1714PFAM: peptidase M48 Ste24p; KEGG: sde:Sde_3604 hypothetical protein. (708 aa)
Slin_2121TIGRFAM: YD repeat protein; KEGG: hypothetical protein LOC100149318. (1837 aa)
Slin_2123TIGRFAM: YD repeat protein; KEGG: hypothetical protein. (1073 aa)
Slin_2706PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide repeat; KEGG: glo:Glov_2533 TPR repeat-containing protein. (928 aa)
Slin_2707Hypothetical protein; KEGG: potential subtilisin/S8 serine protease similar to S. cerevisiae YCR045C; one of two in tandem duplication. (478 aa)
Slin_2708Hypothetical protein; KEGG: bph:Bphy_2992 TPR repeat-containing protein. (246 aa)
Slin_2709RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; KEGG: ppg:PputGB1_1599 RNA polymerase sigma factor SigX; Belongs to the sigma-70 factor family. ECF subfamily. (196 aa)
Slin_2712Hypothetical protein. (94 aa)
Slin_2713KEGG: ecw:EcE24377A_0989 hypothetical protein. (401 aa)
Slin_2714Hypothetical protein. (174 aa)
Slin_2783PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: hypothetical protein. (555 aa)
Slin_3161Hypothetical protein. (39 aa)
Slin_3162Hypothetical protein. (146 aa)
Slin_3163PFAM: Nucleotidyltransferase, predicted; KEGG: pmr:PMI1543 hypothetical protein. (356 aa)
Slin_3165Hypothetical protein. (51 aa)
Slin_3166PFAM: protein of unknown function DUF692; KEGG: scl:sce0141 hypothetical protein. (378 aa)
Slin_3412PFAM: Eco57I restriction endonuclease; KEGG: hhe:HH0798 hypothetical protein. (1159 aa)
Slin_3413PFAM: protein of unknown function DUF1016; KEGG: glo:Glov_3223 protein of unknown function DUF1016. (361 aa)
Slin_3414PFAM: helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicase; helicase domain protein; KEGG: sfu:Sfum_0411 helicase domain protein. (1127 aa)
Slin_3556KEGG: sat:SYN_02218 cation transport ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase. (836 aa)
Slin_4046PFAM: phosphoadenosine phosphosulfate reductase; KEGG: pna:Pnap_4585 phosphoadenosine phosphosulfate reductase. (368 aa)
Slin_4047KEGG: spl:Spea_2304 hypothetical protein. (370 aa)
kptAPhosphotransferase KptA/Tpt1; Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''- cyclic phosphate (APPR>P). May function as an ADP-ribosylase. (182 aa)
Slin_4049PFAM: histidine triad (HIT) protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: pna:Pnap_4872 histidine triad (HIT) protein. (289 aa)
Slin_4050PFAM: type III restriction protein res subunit; SMART: DEAD-like helicase; KEGG: amc:MADE_00119 type III restriction enzyme, res subunit. (453 aa)
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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