STRINGSTRING
Slin_0906 Slin_0906 Slin_0907 Slin_0907 Slin_1087 Slin_1087 Slin_1709 Slin_1709 Slin_1710 Slin_1710 Slin_1711 Slin_1711 Slin_2783 Slin_2783 Slin_3165 Slin_3165 Slin_3166 Slin_3166 Slin_3556 Slin_3556
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Slin_0906KEGG: esa:ESA_01404 hypothetical protein. (192 aa)
Slin_0907Hypothetical protein. (72 aa)
Slin_1087PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: saz:Sama_3558 peptidase S8 and S53, subtilisin, kexin, sedolisin. (466 aa)
Slin_1709Hypothetical protein. (179 aa)
Slin_1710PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: swd:Swoo_3530 peptidase S8 and S53 subtilisin kexin sedolisin. (396 aa)
Slin_1711Hypothetical protein. (612 aa)
Slin_2783PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: hypothetical protein. (555 aa)
Slin_3165Hypothetical protein. (51 aa)
Slin_3166PFAM: protein of unknown function DUF692; KEGG: scl:sce0141 hypothetical protein. (378 aa)
Slin_3556KEGG: sat:SYN_02218 cation transport ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase. (836 aa)
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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