STRINGSTRING
Slin_0704 Slin_0704 Slin_0706 Slin_0706 Slin_0708 Slin_0708 Slin_4003 Slin_4003 Slin_5754 Slin_5754 Slin_5755 Slin_5755 Slin_5756 Slin_5756
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Slin_0704PFAM: Antibiotic biosynthesis monooxygenase; KEGG: pfs:PFLU0664 hypothetical protein. (94 aa)
Slin_0706PFAM: SNARE associated Golgi protein; KEGG: sdy:SDY_2516 hypothetical protein. (213 aa)
Slin_0708PFAM: thioesterase superfamily protein; KEGG: bbt:BBta_2322 thioesterase superfamily protein. (153 aa)
Slin_4003PFAM: Protein of unknown function DUF1810; KEGG: mrd:Mrad2831_3610 hypothetical protein. (146 aa)
Slin_5754PFAM: Integral membrane protein TerC; KEGG: bba:Bd3076 putative transport protein. (354 aa)
Slin_5755TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: neu:NE0559 TonB-dependent receptor protein. (793 aa)
Slin_5756PFAM: Propeptide PepSY amd peptidase M4; PepSY- associated TM helix domain protein; KEGG: tbd:Tbd_0714 hypothetical protein. (388 aa)
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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