STRINGSTRING
Slin_0144 Slin_0144 Slin_1375 Slin_1375 Slin_1377 Slin_1377 Slin_6178 Slin_6178 Slin_6179 Slin_6179 Slin_6181 Slin_6181
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Slin_0144PFAM: glycoside hydrolase family 16; KEGG: hch:HCH_04792 beta-glucanase/beta-glucan synthetase. (337 aa)
Slin_1375Hypothetical protein. (32 aa)
Slin_1377PFAM: protein of unknown function DUF6 transmembrane; KEGG: mxa:MXAN_5504 hypothetical protein. (160 aa)
Slin_6178PFAM: glycoside hydrolase family 16; KEGG: mxa:MXAN_6550 glycosy hydrolase family protein. (329 aa)
Slin_6179Hypothetical protein. (78 aa)
Slin_6181Hypothetical protein. (58 aa)
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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