STRINGSTRING
Slin_0539 Slin_0539 Slin_0791 Slin_0791 Slin_0924 Slin_0924 Slin_0926 Slin_0926 Slin_3498 Slin_3498 Slin_5821 Slin_5821 Slin_6519 Slin_6519
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Slin_0539PFAM: thioesterase superfamily protein; KEGG: scl:sce5779 Acyl-CoA thioester hydrolase. (171 aa)
Slin_0791PFAM: HI0933 family protein; FAD dependent oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: conserved unknown protein; K07007. (408 aa)
Slin_0924PFAM: transcriptional regulator PadR family protein. (112 aa)
Slin_0926Hypothetical protein. (131 aa)
Slin_3498Hypothetical protein; KEGG: pfo:Pfl01_0133 von Willebrand factor, type A. (1440 aa)
Slin_5821PFAM: thioesterase superfamily protein; KEGG: sde:Sde_2480 acyl-CoA hydrolase-like. (185 aa)
Slin_6519TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: bba:Bd2342 mate efflux family protein. (466 aa)
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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