STRINGSTRING
Slin_4041 Slin_4041 Slin_4042 Slin_4042 Slin_4380 Slin_4380 Slin_4381 Slin_4381 Slin_4800 Slin_4800 Slin_4801 Slin_4801
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Slin_4041PFAM: RagB/SusD domain protein. (477 aa)
Slin_4042PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: mxa:MXAN_4746 TonB-dependent receptor. (1026 aa)
Slin_4380PFAM: RagB/SusD domain protein. (478 aa)
Slin_4381PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: mxa:MXAN_4746 TonB-dependent receptor. (1071 aa)
Slin_4800KEGG: hypothetical protein. (498 aa)
Slin_4801PFAM: TonB-dependent receptor plug; KEGG: mxa:MXAN_4746 TonB-dependent receptor. (1074 aa)
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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