STRINGSTRING
Slin_0801 Slin_0801 Slin_0802 Slin_0802 Slin_3399 Slin_3399 Slin_3400 Slin_3400 Slin_4206 Slin_4206 Slin_4207 Slin_4207 Slin_4209 Slin_4209 Slin_4210 Slin_4210 Slin_4662 Slin_4662 Slin_6039 Slin_6039 Slin_6040 Slin_6040 Slin_6377 Slin_6377
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Slin_0801PFAM: TonB-dependent receptor plug; KEGG: mxa:MXAN_4746 TonB-dependent receptor. (1116 aa)
Slin_0802Hypothetical protein. (538 aa)
Slin_3399Hypothetical protein. (531 aa)
Slin_3400PFAM: TonB-dependent receptor plug; KEGG: mxa:MXAN_4746 TonB-dependent receptor. (1057 aa)
Slin_4206PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: mxa:MXAN_4746 TonB-dependent receptor. (1023 aa)
Slin_4207PFAM: RagB/SusD domain protein. (451 aa)
Slin_4209PFAM: RagB/SusD domain protein. (456 aa)
Slin_4210PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: mxa:MXAN_4746 TonB-dependent receptor. (1027 aa)
Slin_4662KEGG: dde:Dde_2188 hypothetical protein. (409 aa)
Slin_6039PFAM: TonB-dependent receptor plug; KEGG: mxa:MXAN_4746 TonB-dependent receptor. (1059 aa)
Slin_6040KEGG: hypothetical protein. (483 aa)
Slin_6377KEGG: bid:Bind_1167 hypothetical protein. (340 aa)
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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