STRINGSTRING
Slin_0069 Slin_0069 Slin_0082 Slin_0082 Slin_0083 Slin_0083 Slin_0156 Slin_0156 Slin_0159 Slin_0159 Slin_0160 Slin_0160 Slin_0395 Slin_0395 Slin_0509 Slin_0509 Slin_0510 Slin_0510 Slin_0511 Slin_0511 Slin_0639 Slin_0639 Slin_1171 Slin_1171 Slin_1172 Slin_1172 Slin_1177 Slin_1177 Slin_1223 Slin_1223 Slin_1351 Slin_1351 Slin_1582 Slin_1582 Slin_1879 Slin_1879 Slin_1880 Slin_1880 Slin_1903 Slin_1903 Slin_2650 Slin_2650 Slin_3024 Slin_3024 Slin_3134 Slin_3134 Slin_3440 Slin_3440 Slin_4030 Slin_4030 Slin_4771 Slin_4771 Slin_4772 Slin_4772 Slin_4773 Slin_4773 Slin_5049 Slin_5049 Slin_5487 Slin_5487 Slin_5811 Slin_5811 Slin_6137 Slin_6137 Slin_6139 Slin_6139 Slin_6276 Slin_6276
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Slin_0069KEGG: sde:Sde_0722 Crp/FNR family transcriptional regulator. (277 aa)
Slin_0082PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: gbm:Gbem_1823 type I phosphodiesterase/nucleotide pyrophosphatase. (462 aa)
Slin_0083KEGG: nha:Nham_0985 hypothetical protein. (407 aa)
Slin_0156KEGG: nha:Nham_0987 hypothetical protein. (224 aa)
Slin_0159PFAM: TatD-related deoxyribonuclease; KEGG: nha:Nham_0991 TatD-related deoxyribonuclease. (310 aa)
Slin_0160PFAM: UbiA prenyltransferase; KEGG: nha:Nham_0986 UbiA prenyltransferase. (291 aa)
Slin_0395PFAM: NIPSNAP family containing protein; KEGG: rpa:RPA2881 hypothetical protein. (262 aa)
Slin_0509PFAM: Xylose isomerase domain protein TIM barrel; KEGG: smd:Smed_5868 xylose isomerase domain- containing protein. (289 aa)
Slin_0510PFAM: oxidoreductase domain protein; KEGG: smd:Smed_3325 oxidoreductase domain- containing protein. (371 aa)
Slin_0511TIGRFAM: membrane-bound dehydrogenase domain protein; PFAM: blue (type 1) copper domain protein; KEGG: ara:Arad_4598 hypothetical protein. (1265 aa)
Slin_0639PFAM: protein of unknown function DUF1080; KEGG: pzu:PHZ_c2159 hypothetical protein. (231 aa)
Slin_1171Glucose/sorbosone dehydrogenase-like protein; KEGG: csa:Csal_0781 L-sorbosone dehydrogenase. (491 aa)
Slin_1172PFAM: blue (type 1) copper domain protein; KEGG: swp:swp_1892 blue (type 1) copper domain protein. (358 aa)
Slin_1177PFAM: protein of unknown function DUF1080; KEGG: pzu:PHZ_c2151 hypothetical protein. (214 aa)
Slin_1223PFAM: lipolytic protein G-D-S-L family; KEGG: pat:Patl_0828 lipolytic enzyme, G-D-S-L. (316 aa)
Slin_1351PFAM: putative esterase; KEGG: scl:sce0967 hypothetical protein. (298 aa)
Slin_1582PFAM: TonB-dependent receptor plug; KEGG: ccs:CCNA_00858 TonB-dependent receptor. (853 aa)
Slin_1879PFAM: protein of unknown function DUF1080; KEGG: amc:MADE_00436 putative multi-domain protein. (629 aa)
Slin_1880PFAM: blue (type 1) copper domain protein; KEGG: rpe:RPE_4871 L-sorbosone dehydrogenase. (722 aa)
Slin_1903PFAM: Carbohydrate binding family 6; PKD domain containing protein; cytochrome c class I; SMART: PKD domain containing protein; cellulose binding type IV; KEGG: sde:Sde_0722 Crp/FNR family transcriptional regulator. (918 aa)
Slin_2650Hypothetical protein. (280 aa)
Slin_3024Hypothetical protein. (116 aa)
Slin_3134KEGG: aav:Aave_1504 cytochrome c, class I. (129 aa)
Slin_3440PFAM: PKD domain containing protein; Carbohydrate binding family 6; cytochrome c class I; SMART: PKD domain containing protein; cellulose binding type IV; KEGG: sde:Sde_0722 Crp/FNR family transcriptional regulator. (1143 aa)
Slin_4030PFAM: PKD domain containing protein; Carbohydrate binding family 6; cytochrome c class I; SMART: PKD domain containing protein; KEGG: sde:Sde_0722 Crp/FNR family transcriptional regulator. (1182 aa)
Slin_4771PFAM: protein of unknown function DUF1080; KEGG: ccs:CCNA_01698 cycloisomaltooligosaccharide glucanotransferase precursor. (268 aa)
Slin_4772PFAM: protein of unknown function DUF1080; KEGG: sml:Smlt1191 hypothetical protein. (628 aa)
Slin_4773PFAM: cytochrome c class I; KEGG: tbd:Tbd_2726 cytochrome c transmembrane protein. (669 aa)
Slin_5049PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: hypothetical protein. (333 aa)
Slin_5487TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; KEGG: bid:Bind_0907 cytochrome c class I. (1023 aa)
Slin_5811TIGRFAM: membrane-bound dehydrogenase domain protein; heme-binding protein; PFAM: cytochrome c class I; KEGG: scl:sce3278 L-sorbosone dehydrogenase. (1040 aa)
Slin_6137PFAM: blue (type 1) copper domain protein; KEGG: xfm:Xfasm12_1745 electron transfer protein azurin I. (669 aa)
Slin_6139Hypothetical protein. (563 aa)
Slin_6276Hypothetical protein; KEGG: sme:SM_b21056 esterase. (411 aa)
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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