STRINGSTRING
Slin_0069 Slin_0069 Slin_0082 Slin_0082 Slin_0083 Slin_0083 Slin_0156 Slin_0156 Slin_0159 Slin_0159 Slin_0160 Slin_0160 Slin_0639 Slin_0639 Slin_1903 Slin_1903 Slin_3440 Slin_3440 Slin_4030 Slin_4030
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Slin_0069KEGG: sde:Sde_0722 Crp/FNR family transcriptional regulator. (277 aa)
Slin_0082PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: gbm:Gbem_1823 type I phosphodiesterase/nucleotide pyrophosphatase. (462 aa)
Slin_0083KEGG: nha:Nham_0985 hypothetical protein. (407 aa)
Slin_0156KEGG: nha:Nham_0987 hypothetical protein. (224 aa)
Slin_0159PFAM: TatD-related deoxyribonuclease; KEGG: nha:Nham_0991 TatD-related deoxyribonuclease. (310 aa)
Slin_0160PFAM: UbiA prenyltransferase; KEGG: nha:Nham_0986 UbiA prenyltransferase. (291 aa)
Slin_0639PFAM: protein of unknown function DUF1080; KEGG: pzu:PHZ_c2159 hypothetical protein. (231 aa)
Slin_1903PFAM: Carbohydrate binding family 6; PKD domain containing protein; cytochrome c class I; SMART: PKD domain containing protein; cellulose binding type IV; KEGG: sde:Sde_0722 Crp/FNR family transcriptional regulator. (918 aa)
Slin_3440PFAM: PKD domain containing protein; Carbohydrate binding family 6; cytochrome c class I; SMART: PKD domain containing protein; cellulose binding type IV; KEGG: sde:Sde_0722 Crp/FNR family transcriptional regulator. (1143 aa)
Slin_4030PFAM: PKD domain containing protein; Carbohydrate binding family 6; cytochrome c class I; SMART: PKD domain containing protein; KEGG: sde:Sde_0722 Crp/FNR family transcriptional regulator. (1182 aa)
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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