STRINGSTRING
Slin_0456 Slin_0456 Slin_1024 Slin_1024 Slin_1231 Slin_1231 Slin_1241 Slin_1241 Slin_1242 Slin_1242 Slin_1253 Slin_1253 Slin_4784 Slin_4784 Slin_4787 Slin_4787 Slin_4788 Slin_4788 Slin_5374 Slin_5374
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Slin_0456PFAM: glycosyl hydrolase family 88; KEGG: eca:ECA3559 plant-inducible protein. (462 aa)
Slin_1024PFAM: glycosyl hydrolase family 88; KEGG: hypothetical protein. (644 aa)
Slin_1231Lysophospholipase L1 and related esterase-like protein; KEGG: hypothetical protein. (280 aa)
Slin_1241KEGG: cja:CJA_3115 putative lipoprotein. (328 aa)
Slin_1242PFAM: lipolytic protein G-D-S-L family; KEGG: sde:Sde_3094 GntR family transcriptional regulator. (251 aa)
Slin_1253PFAM: glycoside hydrolase family 28; KEGG: cja:CJA_0172 polygalacturonase, putative, pga28A; Belongs to the glycosyl hydrolase 28 family. (544 aa)
Slin_4784PFAM: glycoside hydrolase family 28; KEGG: cja:CJA_0172 polygalacturonase, putative, pga28A; Belongs to the glycosyl hydrolase 28 family. (551 aa)
Slin_4787PFAM: Pectinesterase; KEGG: xcb:XC_0125 pectin methylesterase-like protein. (337 aa)
Slin_4788Xylan 1,4-beta-xylosidase; PFAM: glycoside hydrolase family 43; KEGG: cja:CJA_3601 beta-xylosidase/alpha-L- arabinfuranosidase, putative, gly43I; Belongs to the glycosyl hydrolase 43 family. (562 aa)
Slin_5374PFAM: glycoside hydrolase family 28; KEGG: Os09g0439400; hypothetical protein; Belongs to the glycosyl hydrolase 28 family. (442 aa)
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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