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rpsU rpsU rpsT rpsT rplI rplI rpsR rpsR rpsF rpsF rpsP rpsP rplS rplS rpsO rpsO rplT rplT rpmI rpmI rpmA rpmA rplU rplU rplY rplY rpsI rpsI rpmF rpmF rpmG rpmG rplQ rplQ rpmE2 rpmE2 rpmB rpmB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rpsUTIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21; KEGG: bac:BamMC406_5585 ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. (65 aa)
rpsTRibosomal protein S20; Binds directly to 16S ribosomal RNA. (88 aa)
rplIRibosomal protein L9; Binds to the 23S rRNA. (147 aa)
rpsRRibosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. (83 aa)
rpsFRibosomal protein S6; Binds together with S18 to 16S ribosomal RNA. (124 aa)
rpsPTIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: cak:Caul_4888 ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. (186 aa)
rplSRibosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. (124 aa)
rpsORibosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. (91 aa)
rplTRibosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (114 aa)
rpmITIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35; KEGG: mfa:Mfla_2001 50S ribosomal protein L35P; Belongs to the bacterial ribosomal protein bL35 family. (64 aa)
rpmATIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: similar to 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. (100 aa)
rplURibosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (105 aa)
rplYRibosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. (188 aa)
rpsIPFAM: ribosomal protein S9; KEGG: sat:SYN_00233 SSU ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family. (128 aa)
rpmFTIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: maq:Maqu_1870 ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. (64 aa)
rpmGTIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; KEGG: predicted protein; Belongs to the bacterial ribosomal protein bL33 family. (61 aa)
rplQTIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17; KEGG: aav:Aave_0627 50S ribosomal protein L17P. (204 aa)
rpmE2TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; KEGG: mms:mma_0620 50S ribosomal protein L31 type B. (90 aa)
rpmBTIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: bpt:Bpet3313 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. (79 aa)
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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