STRINGSTRING
rplI rplI rpsR rpsR rpsF rpsF rpsP rpsP rplS rplS rpsO rpsO rpmA rpmA rplU rplU rpsI rpsI rplQ rplQ
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rplIRibosomal protein L9; Binds to the 23S rRNA. (147 aa)
rpsRRibosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. (83 aa)
rpsFRibosomal protein S6; Binds together with S18 to 16S ribosomal RNA. (124 aa)
rpsPTIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: cak:Caul_4888 ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. (186 aa)
rplSRibosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. (124 aa)
rpsORibosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. (91 aa)
rpmATIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: similar to 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. (100 aa)
rplURibosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (105 aa)
rpsIPFAM: ribosomal protein S9; KEGG: sat:SYN_00233 SSU ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family. (128 aa)
rplQTIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17; KEGG: aav:Aave_0627 50S ribosomal protein L17P. (204 aa)
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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