STRINGSTRING
rpsU rpsU rpsT rpsT rpmF rpmF rpmE2 rpmE2 rpmB rpmB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rpsUTIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21; KEGG: bac:BamMC406_5585 ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. (65 aa)
rpsTRibosomal protein S20; Binds directly to 16S ribosomal RNA. (88 aa)
rpmFTIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: maq:Maqu_1870 ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. (64 aa)
rpmE2TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; KEGG: mms:mma_0620 50S ribosomal protein L31 type B. (90 aa)
rpmBTIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: bpt:Bpet3313 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. (79 aa)
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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