STRINGSTRING
Slin_1649 Slin_1649 Slin_1852 Slin_1852 Slin_3345 Slin_3345 Slin_3846 Slin_3846 Slin_3918 Slin_3918
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Slin_1649PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: rpt:Rpal_4645 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase. (301 aa)
Slin_1852PFAM: flavin-containing monooxygenase FMO; FAD- dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mlo:mll7934 dimethylaniline monooxygenase. (378 aa)
Slin_3345PFAM: Amidase; KEGG: oca:OCAR_4104 peptide amidase. (526 aa)
Slin_3846PFAM: Amidase; KEGG: mxa:MXAN_3566 amidase. (540 aa)
Slin_3918PFAM: Amidase; KEGG: dol:Dole_2535 amidase; Belongs to the amidase family. (519 aa)
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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