STRINGSTRING
Slin_0416 Slin_0416 Slin_1056 Slin_1056 uxuA uxuA uxaC uxaC Slin_1069 Slin_1069 Slin_1247 Slin_1247 kduI kduI Slin_3404 Slin_3404 Slin_3895 Slin_3895 Slin_3948 Slin_3948 Slin_4785 Slin_4785 uxaC-2 uxaC-2 uxuA-2 uxuA-2 Slin_6198 Slin_6198
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Slin_0416PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein; KEGG: csa:Csal_1735 altronate dehydratase. (582 aa)
Slin_1056PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: tau:Tola_3026 mannitol dehydrogenase domain protein. (513 aa)
uxuAMannonate dehydratase; Catalyzes the dehydration of D-mannonate. (399 aa)
uxaCPFAM: Glucuronate isomerase; KEGG: cja:CJA_2772 glucuronate isomerase. (470 aa)
Slin_1069Mannonate dehydratase; Catalyzes the dehydration of D-mannonate. (375 aa)
Slin_1247PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: yen:YE3707 altronate oxidoreductase. (525 aa)
kduI4-deoxy-L-threo-5-hexosulose-uronateketol- isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family. (286 aa)
Slin_3404PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: sde:Sde_2646 phosphatidylserine decarboxylase. (257 aa)
Slin_3895Mannonate dehydratase; Catalyzes the dehydration of D-mannonate. (370 aa)
Slin_3948PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: sea:SeAg_B1541 mandelate racemase/muconate lactonizing enzyme, C-domain protein. (451 aa)
Slin_4785PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; KEGG: csa:Csal_1735 altronate dehydratase. (551 aa)
uxaC-2PFAM: Glucuronate isomerase; KEGG: cja:CJA_2772 glucuronate isomerase. (477 aa)
uxuA-2Mannonate dehydratase; Catalyzes the dehydration of D-mannonate. (393 aa)
Slin_6198PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ect:ECIAI39_0671 putative short-chain dehydrogenase/reductase SDR precursor. (260 aa)
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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