STRINGSTRING
Slin_0347 Slin_0347 Slin_0361 Slin_0361 glgB glgB Slin_0399 Slin_0399 Slin_0759 Slin_0759 Slin_3112 Slin_3112 Slin_3113 Slin_3113 Slin_3114 Slin_3114 Slin_3551 Slin_3551 Slin_3625 Slin_3625 Slin_4463 Slin_4463 glgE glgE Slin_4791 Slin_4791 Slin_5124 Slin_5124 Slin_5281 Slin_5281 Slin_5282 Slin_5282 Slin_5697 Slin_5697 Slin_6209 Slin_6209
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Slin_0347PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: ank:AnaeK_4258 alpha amylase catalytic region. (522 aa)
Slin_0361PFAM: alpha amylase catalytic region; glycoside hydrolase family 13 domain protein; SMART: alpha amylase catalytic sub domain; KEGG: mes:Meso_2421 glycoside hydrolase, family 13- like; Belongs to the glycosyl hydrolase 13 family. (958 aa)
glgB1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily. (646 aa)
Slin_0399TIGRFAM: trehalose synthase-fused possible maltokinase; KEGG: gbm:Gbem_0136 trehalose synthase. (558 aa)
Slin_0759KEGG: mxa:MXAN_1534 glycogen debranching enzyme GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; Belongs to the glycosyl hydrolase 13 family. (708 aa)
Slin_3112KEGG: sfu:Sfum_2351 malto-oligosyltrehalose synthase; TIGRFAM: malto-oligosyltrehalose synthase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain. (935 aa)
Slin_3113KEGG: sfu:Sfum_2349 malto-oligosyltrehalose trehalohydrolase; TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: alpha amylase catalytic region; glycoside hydrolase family 13 domain protein; SMART: alpha amylase catalytic sub domain. (640 aa)
Slin_3114PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: rlt:Rleg2_1908 alpha amylase catalytic region. (579 aa)
Slin_3551KEGG: nis:NIS_0944 glycogen/starch/alpha-glucan phosphorylase; TIGRFAM: alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35. (567 aa)
Slin_3625PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: avn:Avin_08330 sucrose isomerase. (571 aa)
Slin_4463PFAM: Starch synthase catalytic domain protein; KEGG: gbm:Gbem_3400 glycogen/starch synthase, ADP- glucose type. (268 aa)
glgEAlpha amylase catalytic region; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB. (681 aa)
Slin_4791KEGG: ppd:Ppro_3263 trehalose synthase; TIGRFAM: trehalose synthase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain. (1114 aa)
Slin_5124KEGG: sat:SYN_01069 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77. (525 aa)
Slin_5281KEGG: sfu:Sfum_2349 malto-oligosyltrehalose trehalohydrolase; TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: alpha amylase catalytic region; glycoside hydrolase family 13 domain protein; SMART: alpha amylase catalytic sub domain. (642 aa)
Slin_5282KEGG: sfu:Sfum_2351 malto-oligosyltrehalose synthase; TIGRFAM: malto-oligosyltrehalose synthase; 4-alpha- glucanotransferase; PFAM: glycoside hydrolase family 77; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain. (1411 aa)
Slin_5697PFAM: glycogen synthase; KEGG: hypothetical protein; K00693 glycogen(starch) synthase. (606 aa)
Slin_6209KEGG: gme:Gmet_3467 malto-oligosyltrehalose trehalohydrolase; TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: alpha amylase catalytic region; glycoside hydrolase family 13 domain protein; SMART: alpha amylase catalytic sub domain. (621 aa)
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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