STRINGSTRING
Slin_2167 Slin_2167 Slin_3562 Slin_3562 Slin_3734 Slin_3734 Slin_5102 Slin_5102 Slin_5103 Slin_5103 Slin_5671 Slin_5671 Slin_5670 Slin_5670
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Slin_2167PFAM: cytochrome c oxidase subunit I; KEGG: bur:Bcep18194_C7361 cytochrome-c oxidase; Belongs to the heme-copper respiratory oxidase family. (657 aa)
Slin_3562KEGG: mxa:MXAN_5541 cytochrome c oxidase, cbb3- type, subunit I/II; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; cytochrome c oxidase subunit I; Belongs to the heme-copper respiratory oxidase family. (736 aa)
Slin_3734PFAM: cytochrome c oxidase subunit I; KEGG: bur:Bcep18194_C7361 cytochrome-c oxidase; Belongs to the heme-copper respiratory oxidase family. (657 aa)
Slin_5102KEGG: wol:WD0734 NADH dehydrogenase subunit E; TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit. (166 aa)
Slin_5103NADH-quinone oxidoreductase, F subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family. (446 aa)
Slin_5671PFAM: cytochrome c oxidase subunit I; KEGG: bur:Bcep18194_C7361 cytochrome-c oxidase; Belongs to the heme-copper respiratory oxidase family. (627 aa)
Slin_5670Cytochrome c oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). (373 aa)
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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