30 items (Spirosoma linguale) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Slin_5052	PFAM: glycoside hydrolase family 9; glycoside hydrolase family 9 domain protein Ig domain protein; KEGG: cja:CJA_1633 endo-1,4-beta glucanase, putative, cel9B. (587 aa)
	Slin_2630	PFAM: N-acylglucosamine 2-epimerase; KEGG: hypothetical protein; K01787 N- acylglucosamine 2-epimerase. (417 aa)
	Slin_2522	TIGRFAM: glycogen debranching enzyme; PFAM: Amylo-alpha-16-glucosidase; KEGG: scl:sce2296 4-alpha-glucanotransferase. (652 aa)
	Slin_2521	KEGG: sfu:Sfum_0673 hypothetical protein. (885 aa)
	Slin_2302	KEGG: met:M446_5810 hypothetical protein. (903 aa)
	Slin_1945	PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: hypothetical protein. (819 aa)
	Slin_1878	Alpha-L-fucosidase; KEGG: cja:CJA_3593 alpha-L-fucosidase, putative, afc95B. (825 aa)
	Slin_1861	KEGG: met:M446_5810 hypothetical protein. (892 aa)
	Slin_1806	PFAM: glycosyl hydrolase family 88; KEGG: ppr:PBPRB0150 hypothetical protein. (378 aa)
	Slin_1747	PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; KEGG: nme:NMB0390 maltose phosphorylase. (778 aa)
	Slin_1484	Alpha-L-fucosidase; KEGG: cja:CJA_3593 alpha-L-fucosidase, putative, afc95B. (842 aa)
	Slin_1409	PFAM: glycoside hydrolase family 8; KEGG: scl:sce3034 endo-1,4-beta-xylanase. (432 aa)
	Slin_1249	PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: ccs:CCNA_01029 alpha-L-rhamnosidase. (951 aa)
	Slin_1024	PFAM: glycosyl hydrolase family 88; KEGG: hypothetical protein. (644 aa)
	Slin_1019	PFAM: glycosyl hydrolase family 88; KEGG: hypothetical protein. (393 aa)
	Slin_0551	PFAM: glycosyl hydrolase family 88; KEGG: rle:pRL120662 putative unsaturated glucuronyl hydrolase. (397 aa)
	Slin_0456	PFAM: glycosyl hydrolase family 88; KEGG: eca:ECA3559 plant-inducible protein. (462 aa)
	Slin_0271	N-acylglucosamine 2-epimerase; Catalyzes the reversible epimerization of cellobiose to 4-O- beta-D-glucopyranosyl-D-mannose (Glc-Man). (402 aa)
	Slin_6430	PFAM: alpha-L-rhamnosidase; KEGG: ccs:CCNA_01029 alpha-L-rhamnosidase. (757 aa)
	Slin_6381	PFAM: N-acylglucosamine 2-epimerase; KEGG: sde:Sde_0508 hypothetical protein. (427 aa)
	Slin_6094	Glycogen debranching protein-like protein; KEGG: hypothetical protein. (815 aa)
	Slin_6048	Alpha,alpha-trehalase; PFAM: glycoside hydrolase family 37; KEGG: cja:CJA_0284 trehalase, putative, tre37A. (503 aa)
	Slin_5917	N-acyl-D-glucosamine 2-epimerase-like protein; KEGG: hypothetical protein; K01787 N- acylglucosamine 2-epimerase. (415 aa)
	Slin_5014	Alpha,alpha-trehalase; PFAM: glycoside hydrolase family 37; KEGG: cja:CJA_0284 trehalase, putative, tre37A. (535 aa)
	Slin_4520	PFAM: glycoside hydrolase family 9; glycoside hydrolase family 9 domain protein Ig domain protein; polysaccharide deacetylase; KEGG: xac:XAC2522 cellulase. (906 aa)
	Slin_4246	PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: hypothetical protein. (793 aa)
	Slin_4029	PFAM: conserved hypothetical protein; KEGG: xcc:XCC2893 hypothetical protein. (475 aa)
	Slin_3580	PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: hypothetical protein. (918 aa)
	Slin_2836	Hypothetical protein; KEGG: ent:Ent638_3433 glycosy hydrolase family protein. (469 aa)
	Slin_6449	PFAM: protein of unknown function DUF608; KEGG: hypothetical protein. (857 aa)

Your Current Organism:

Spirosoma linguale

NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Slin_0271	Slin_5917	N-acylglucosamine 2-epimerase; Catalyzes the reversible epimerization of cellobiose to 4-O- beta-D-glucopyranosyl-D-mannose (Glc-Man).	N-acyl-D-glucosamine 2-epimerase-like protein; KEGG: hypothetical protein; K01787 N- acylglucosamine 2-epimerase.	0.507
Slin_0456	Slin_1019	PFAM: glycosyl hydrolase family 88; KEGG: eca:ECA3559 plant-inducible protein.	PFAM: glycosyl hydrolase family 88; KEGG: hypothetical protein.	0.449
Slin_0551	Slin_6430	PFAM: glycosyl hydrolase family 88; KEGG: rle:pRL120662 putative unsaturated glucuronyl hydrolase.	PFAM: alpha-L-rhamnosidase; KEGG: ccs:CCNA_01029 alpha-L-rhamnosidase.	0.435
Slin_1019	Slin_0456	PFAM: glycosyl hydrolase family 88; KEGG: hypothetical protein.	PFAM: glycosyl hydrolase family 88; KEGG: eca:ECA3559 plant-inducible protein.	0.449
Slin_1249	Slin_1878	PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: ccs:CCNA_01029 alpha-L-rhamnosidase.	Alpha-L-fucosidase; KEGG: cja:CJA_3593 alpha-L-fucosidase, putative, afc95B.	0.413
Slin_1249	Slin_1945	PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: ccs:CCNA_01029 alpha-L-rhamnosidase.	PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: hypothetical protein.	0.631
Slin_1249	Slin_6449	PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: ccs:CCNA_01029 alpha-L-rhamnosidase.	PFAM: protein of unknown function DUF608; KEGG: hypothetical protein.	0.426
Slin_1484	Slin_1878	Alpha-L-fucosidase; KEGG: cja:CJA_3593 alpha-L-fucosidase, putative, afc95B.	Alpha-L-fucosidase; KEGG: cja:CJA_3593 alpha-L-fucosidase, putative, afc95B.	0.908
Slin_1747	Slin_5014	PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; KEGG: nme:NMB0390 maltose phosphorylase.	Alpha,alpha-trehalase; PFAM: glycoside hydrolase family 37; KEGG: cja:CJA_0284 trehalase, putative, tre37A.	0.928
Slin_1747	Slin_6048	PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; KEGG: nme:NMB0390 maltose phosphorylase.	Alpha,alpha-trehalase; PFAM: glycoside hydrolase family 37; KEGG: cja:CJA_0284 trehalase, putative, tre37A.	0.928
Slin_1878	Slin_1249	Alpha-L-fucosidase; KEGG: cja:CJA_3593 alpha-L-fucosidase, putative, afc95B.	PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: ccs:CCNA_01029 alpha-L-rhamnosidase.	0.413
Slin_1878	Slin_1484	Alpha-L-fucosidase; KEGG: cja:CJA_3593 alpha-L-fucosidase, putative, afc95B.	Alpha-L-fucosidase; KEGG: cja:CJA_3593 alpha-L-fucosidase, putative, afc95B.	0.908
Slin_1945	Slin_1249	PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: hypothetical protein.	PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: ccs:CCNA_01029 alpha-L-rhamnosidase.	0.631
Slin_1945	Slin_3580	PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: hypothetical protein.	PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: hypothetical protein.	0.692
Slin_1945	Slin_6449	PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: hypothetical protein.	PFAM: protein of unknown function DUF608; KEGG: hypothetical protein.	0.504
Slin_2521	Slin_2522	KEGG: sfu:Sfum_0673 hypothetical protein.	TIGRFAM: glycogen debranching enzyme; PFAM: Amylo-alpha-16-glucosidase; KEGG: scl:sce2296 4-alpha-glucanotransferase.	0.669
Slin_2522	Slin_2521	TIGRFAM: glycogen debranching enzyme; PFAM: Amylo-alpha-16-glucosidase; KEGG: scl:sce2296 4-alpha-glucanotransferase.	KEGG: sfu:Sfum_0673 hypothetical protein.	0.669
Slin_2630	Slin_5917	PFAM: N-acylglucosamine 2-epimerase; KEGG: hypothetical protein; K01787 N- acylglucosamine 2-epimerase.	N-acyl-D-glucosamine 2-epimerase-like protein; KEGG: hypothetical protein; K01787 N- acylglucosamine 2-epimerase.	0.916
Slin_2836	Slin_6381	Hypothetical protein; KEGG: ent:Ent638_3433 glycosy hydrolase family protein.	PFAM: N-acylglucosamine 2-epimerase; KEGG: sde:Sde_0508 hypothetical protein.	0.415
Slin_3580	Slin_1945	PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: hypothetical protein.	PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: hypothetical protein.	0.692