STRINGSTRING
Slin_0029 Slin_0029 argS argS ileS ileS Slin_0407 Slin_0407 Slin_0568 Slin_0568 Slin_0600 Slin_0600 nadE nadE Slin_0712 Slin_0712 Slin_0713 Slin_0713 Slin_0790 Slin_0790 mnmA mnmA tyrS tyrS tilS tilS coaD coaD metG metG Slin_1696 Slin_1696 Slin_1697 Slin_1697 leuS leuS glnS glnS guaA guaA Slin_2912 Slin_2912 Slin_3466 Slin_3466 Slin_3549 Slin_3549 Slin_3570 Slin_3570 Slin_3574 Slin_3574 Slin_3912 Slin_3912 Slin_4046 Slin_4046 Slin_4276 Slin_4276 panC panC gltX gltX valS valS nadD nadD cysS cysS Slin_5795 Slin_5795 Slin_6003 Slin_6003 Slin_6186 Slin_6186 Slin_6227 Slin_6227
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Slin_0029Deoxyribodipyrimidine photo-lyase; PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: bba:Bd2206 deoxyribodipyrimidine photolyase- class I. (438 aa)
argSarginyl-tRNA synthetase; KEGG: bba:Bd2027 hypothetical protein; TIGRFAM: arginyl-tRNA synthetase. (599 aa)
ileSisoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 2 subfamily. (1148 aa)
Slin_0407PFAM: argininosuccinate synthase; Queuosine synthesis-like; KEGG: mxa:MXAN_5108 argininosuccinate synthase. (400 aa)
Slin_0568PFAM: asparagine synthase; KEGG: mlo:mll5256 asparagine synthetase. (647 aa)
Slin_0600Deoxyribodipyrimidine photo-lyase; PFAM: DNA photolyase FAD-binding; KEGG: pha:PSHAa2200 deoxyribodipyrimidine photolyase. (561 aa)
nadENAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. (700 aa)
Slin_0712PFAM: Electron transfer flavoprotein alpha subunit; Electron transfer flavoprotein alpha/beta-subunit; KEGG: sat:SYN_02637 electron transfer flavoprotein alpha-subunit. (320 aa)
Slin_0713PFAM: Electron transfer flavoprotein alpha/beta- subunit; KEGG: sat:SYN_02636 electron transfer flavoprotein beta-subunit. (245 aa)
Slin_0790TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase; FAD synthetase; cytidylyltransferase; KEGG: dol:Dole_2234 riboflavin biosynthesis protein RibF; Belongs to the ribF family. (309 aa)
mnmAtRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. (391 aa)
tyrStyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily. (433 aa)
tilStRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family. (446 aa)
coaDPantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. (157 aa)
metGmethionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. (682 aa)
Slin_1696KEGG: afw:Anae109_1644 sulfate adenylyltransferase subunit 2; TIGRFAM: sulfate adenylyltransferase, small subunit; PFAM: phosphoadenosine phosphosulfate reductase. (300 aa)
Slin_1697Phosphoadenosine phosphosulfate reductase; Reduction of activated sulfate into sulfite. (243 aa)
leuSTIGRFAM: leucyl-tRNA synthetase; KEGG: EMB2369 (EMBRYO DEFECTIVE 2369); ATP binding / aminoacyl-tRNA ligase; K01869 leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. (949 aa)
glnSTIGRFAM: glutaminyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain; KEGG: dvl:Dvul_0417 glutaminyl-tRNA synthetase. (570 aa)
guaAGMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP. (510 aa)
Slin_2912KEGG: sun:SUN_1925 tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib. (325 aa)
Slin_3466rfaE bifunctional protein; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose. (159 aa)
Slin_3549PFAM: UspA domain protein; KEGG: lpc:LPC_2094 hypothetical protein. (278 aa)
Slin_3570PFAM: UspA domain protein; KEGG: aav:Aave_3154 UspA domain-containing protein. (271 aa)
Slin_3574PFAM: UspA domain protein; KEGG: dat:HRM2_33460 Usp1. (285 aa)
Slin_3912PFAM: protein of unknown function DUF218; KEGG: ppr:PBPRB0680 hypothetical protein. (222 aa)
Slin_4046PFAM: phosphoadenosine phosphosulfate reductase; KEGG: pna:Pnap_4585 phosphoadenosine phosphosulfate reductase. (368 aa)
Slin_4276PFAM: protein of unknown function DUF218; KEGG: pae:PA3985 hypothetical protein. (272 aa)
panCPantoate/beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family. (280 aa)
gltXglutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. (509 aa)
valSvalyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily. (895 aa)
nadDNicotinate (nicotinamide) nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). (190 aa)
cysSKEGG: glo:Glov_0404 cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia; Cysteinyl-tRNA synthetase class Ia DALR; tRNA synthetase class I (M); Belongs to the class-I aminoacyl-tRNA synthetase family. (499 aa)
Slin_5795TIGRFAM: ATP binding protein; PFAM: protein of unknown function DUF71 ATP-binding region; KEGG: nha:Nham_0072 protein of unknown function DUF71, ATP-binding region. (244 aa)
Slin_6003TIGRFAM: cytidyltransferase-related domain protein; PFAM: cytidylyltransferase; KEGG: sfu:Sfum_3306 nicotinamide mononucleotide adenylyltransferase. (187 aa)
Slin_6186Cryptochrome, DASH family; KEGG: cry-dash; cryptochrome DASH; TIGRFAM: cryptochrome, DASH family; PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein. (487 aa)
Slin_6227PFAM: protein of unknown function DUF218; KEGG: smt:Smal_1483 protein of unknown function DUF218. (420 aa)
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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