STRINGSTRING
Slin_0474 Slin_0474 Slin_0032 Slin_0032 Slin_0033 Slin_0033 Slin_0034 Slin_0034 Slin_0679 Slin_0679 Slin_0682 Slin_0682 Slin_1388 Slin_1388 Slin_1814 Slin_1814 mtgA mtgA Slin_5076 Slin_5076 Slin_4500 Slin_4500 Slin_3220 Slin_3220 Slin_3074 Slin_3074
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Slin_0474PFAM: Peptidoglycan-binding lysin domain; Lytic transglycosylase catalytic; SMART: Peptidoglycan-binding LysM; KEGG: dat:HRM2_18830 predicted membrane-bound peptidoglycan-binding family protein. (801 aa)
Slin_0032PFAM: Lytic transglycosylase catalytic; KEGG: dat:HRM2_18830 predicted membrane-bound peptidoglycan-binding family protein. (413 aa)
Slin_0033PFAM: Lytic transglycosylase catalytic; KEGG: dal:Dalk_2510 lytic transglycosylase catalytic. (365 aa)
Slin_0034PFAM: Lytic transglycosylase catalytic; KEGG: dal:Dalk_2510 lytic transglycosylase catalytic. (355 aa)
Slin_0679KEGG: vha:VIBHAR_01395 hypothetical protein. (195 aa)
Slin_0682Hypothetical protein; KEGG: hch:HCH_03670 EF hand domain-containing protein. (201 aa)
Slin_1388Glycosyl transferase family 51; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors. Belongs to the glycosyltransferase 51 family. (759 aa)
Slin_1814PFAM: Lytic transglycosylase catalytic; KEGG: dat:HRM2_18830 predicted membrane-bound peptidoglycan-binding family protein. (276 aa)
mtgAMonofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family. (222 aa)
Slin_5076TIGRFAM: penicillin-binding protein 1C; PFAM: glycosyl transferase family 51; Penicillin- binding domain protein; penicillin-binding protein transpeptidase; KEGG: mxa:MXAN_2419 penicillin-binding protein 1C. (816 aa)
Slin_4500PFAM: Lytic transglycosylase catalytic; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; KEGG: dde:Dde_3580 peptidoglycan-binding LysM. (523 aa)
Slin_3220PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase; KEGG: cti:RALTA_B1852 peptidoglycan glycosyltransferase. (785 aa)
Slin_3074PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase; KEGG: dia:Dtpsy_1674 peptidoglycan glycosyltransferase. (854 aa)
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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