STRINGSTRING
Slin_0389 Slin_0389 Slin_0781 Slin_0781 Slin_0890 Slin_0890 Slin_1043 Slin_1043 Slin_1094 Slin_1094 Slin_1095 Slin_1095 Slin_1469 Slin_1469 Slin_1623 Slin_1623 Slin_2702 Slin_2702 Slin_3995 Slin_3995 Slin_4229 Slin_4229 Slin_4701 Slin_4701 Slin_5540 Slin_5540 Slin_5572 Slin_5572 Slin_6331 Slin_6331 Slin_6513 Slin_6513
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Slin_0389PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nha:Nham_2538 ABC transporter related. (616 aa)
Slin_0781PFAM: ABC transporter related; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: reu:Reut_A0929 bacteriocin-processing peptidase. (827 aa)
Slin_0890PFAM: ABC transporter related; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: reu:Reut_A0929 bacteriocin-processing peptidase. (771 aa)
Slin_1043PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: pna:Pnap_0164 ABC transporter related. (598 aa)
Slin_1094PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: scl:sce5644 carbohydrate ABC transporter. (584 aa)
Slin_1095PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: sfu:Sfum_1390 ABC transporter related. (587 aa)
Slin_1469PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: gsu:GSU0101 ABC transporter, ATP- binding/permease protein. (586 aa)
Slin_1623PFAM: ABC transporter related; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: bph:Bphy_3834 cyclic nucleotide-regulated ABC bacteriocin/lantibiotic exporter. (735 aa)
Slin_2702PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: bpt:Bpet2952 putative ABC-transporter membrane-spanning ATP-binding component. (588 aa)
Slin_3995KEGG: mfa:Mfla_2223 ABC transporter related. (334 aa)
Slin_4229PFAM: ABC transporter related; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: bph:Bphy_3834 cyclic nucleotide-regulated ABC bacteriocin/lantibiotic exporter. (726 aa)
Slin_4701PFAM: ABC transporter related; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: eba:ebA1666 fusion of ABC transporter-type transmembrane and ATP binding protein. (728 aa)
Slin_5540PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: mxa:MXAN_1097 efflux ABC transporter, permease/ATP-binding protein. (601 aa)
Slin_5572PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: tmz:Tmz1t_1567 ABC transporter related. (593 aa)
Slin_6331PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: geo:Geob_3726 cyclic nucleotide-binding protein. (593 aa)
Slin_6513PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: sat:SYN_01564 phospholipid-lipopolysaccharide ABC transporter. (613 aa)
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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