STRINGSTRING
Slin_1253 Slin_1253 Slin_1130 Slin_1130 Slin_0619 Slin_0619 Slin_0327 Slin_0327 Slin_4784 Slin_4784 Slin_5374 Slin_5374 Slin_4353 Slin_4353 Slin_3272 Slin_3272 Slin_4605 Slin_4605 Slin_3849 Slin_3849 Slin_3866 Slin_3866 Slin_4349 Slin_4349 Slin_2680 Slin_2680
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Slin_1253PFAM: glycoside hydrolase family 28; KEGG: cja:CJA_0172 polygalacturonase, putative, pga28A; Belongs to the glycosyl hydrolase 28 family. (544 aa)
Slin_1130PFAM: PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; Parallel beta- helix repeat; KEGG: hypothetical protein. (789 aa)
Slin_0619PFAM: Polymorphic membrane protein Chlamydia; KEGG: gsu:GSU0754 fibronectin type III domain- containing protein. (1216 aa)
Slin_0327TIGRFAM: conserved repeat domain protein; PFAM: protein of unknown function DUF11; Polymorphic membrane protein Chlamydia; KEGG: dol:Dole_1788 polymorphic membrane protein Chlamydia. (743 aa)
Slin_4784PFAM: glycoside hydrolase family 28; KEGG: cja:CJA_0172 polygalacturonase, putative, pga28A; Belongs to the glycosyl hydrolase 28 family. (551 aa)
Slin_5374PFAM: glycoside hydrolase family 28; KEGG: Os09g0439400; hypothetical protein; Belongs to the glycosyl hydrolase 28 family. (442 aa)
Slin_4353KEGG: mlo:mll4444 hypothetical protein. (489 aa)
Slin_3272SMART: Parallel beta-helix repeat; KEGG: pmy:Pmen_0653 hypothetical protein. (402 aa)
Slin_4605KEGG: scl:sce0710 hypothetical protein. (571 aa)
Slin_3849SMART: Parallel beta-helix repeat; KEGG: scl:sce0710 hypothetical protein. (526 aa)
Slin_3866KEGG: scl:sce0710 hypothetical protein. (535 aa)
Slin_4349PFAM: Glycosyl hydrolase family 98 putative carbohydrate binding module; Carbohydrate-binding CenC domain protein; PA14 domain protein; SMART: Glycosyl hydrolase family 98 putative carbohydrate binding module; PA14 domain protein; Parallel beta-helix repeat; KEGG: lch:Lcho_2340 hypothetical protein. (1236 aa)
Slin_2680PFAM: Glycosyl hydrolase family 98 putative carbohydrate binding module; PA14 domain protein; SMART: Glycosyl hydrolase family 98 putative carbohydrate binding module; PA14 domain protein; Parallel beta-helix repeat; KEGG: cja:CJA_2385 MSHA biogenesis protein MshQ. (1206 aa)
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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