Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| dat | dus | OCA5_c19290 | OCA5_c19340 | D-alanine aminotransferase Dat. | tRNA-dihydrouridine synthase Dus; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | 0.570 |
| dat | ntrB | OCA5_c19290 | OCA5_c19330 | D-alanine aminotransferase Dat. | Nitrogen regulation protein NtrB. | 0.532 |
| dat | ntrC | OCA5_c19290 | OCA5_c19320 | D-alanine aminotransferase Dat. | Nitrogen assimilation regulatory protein NtrC; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. | 0.523 |
| dat | ntrX | OCA5_c19290 | OCA5_c19300 | D-alanine aminotransferase Dat. | Nitrogen assimilation regulatory protein NtrX. | 0.800 |
| dat | ntrY | OCA5_c19290 | OCA5_c19310 | D-alanine aminotransferase Dat. | Nitrogen regulation protein NtrY. | 0.800 |
| dus | dat | OCA5_c19340 | OCA5_c19290 | tRNA-dihydrouridine synthase Dus; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | D-alanine aminotransferase Dat. | 0.570 |
| dus | ntrB | OCA5_c19340 | OCA5_c19330 | tRNA-dihydrouridine synthase Dus; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | Nitrogen regulation protein NtrB. | 0.839 |
| dus | ntrC | OCA5_c19340 | OCA5_c19320 | tRNA-dihydrouridine synthase Dus; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | Nitrogen assimilation regulatory protein NtrC; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. | 0.800 |
| dus | ntrX | OCA5_c19340 | OCA5_c19300 | tRNA-dihydrouridine synthase Dus; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | Nitrogen assimilation regulatory protein NtrX. | 0.517 |
| dus | ntrY | OCA5_c19340 | OCA5_c19310 | tRNA-dihydrouridine synthase Dus; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | Nitrogen regulation protein NtrY. | 0.532 |
| ntrB | dat | OCA5_c19330 | OCA5_c19290 | Nitrogen regulation protein NtrB. | D-alanine aminotransferase Dat. | 0.532 |
| ntrB | dus | OCA5_c19330 | OCA5_c19340 | Nitrogen regulation protein NtrB. | tRNA-dihydrouridine synthase Dus; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | 0.839 |
| ntrB | ntrC | OCA5_c19330 | OCA5_c19320 | Nitrogen regulation protein NtrB. | Nitrogen assimilation regulatory protein NtrC; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. | 0.991 |
| ntrB | ntrX | OCA5_c19330 | OCA5_c19300 | Nitrogen regulation protein NtrB. | Nitrogen assimilation regulatory protein NtrX. | 0.846 |
| ntrB | ntrY | OCA5_c19330 | OCA5_c19310 | Nitrogen regulation protein NtrB. | Nitrogen regulation protein NtrY. | 0.835 |
| ntrC | dat | OCA5_c19320 | OCA5_c19290 | Nitrogen assimilation regulatory protein NtrC; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. | D-alanine aminotransferase Dat. | 0.523 |
| ntrC | dus | OCA5_c19320 | OCA5_c19340 | Nitrogen assimilation regulatory protein NtrC; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. | tRNA-dihydrouridine synthase Dus; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | 0.800 |
| ntrC | ntrB | OCA5_c19320 | OCA5_c19330 | Nitrogen assimilation regulatory protein NtrC; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. | Nitrogen regulation protein NtrB. | 0.991 |
| ntrC | ntrX | OCA5_c19320 | OCA5_c19300 | Nitrogen assimilation regulatory protein NtrC; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. | Nitrogen assimilation regulatory protein NtrX. | 0.599 |
| ntrC | ntrY | OCA5_c19320 | OCA5_c19310 | Nitrogen assimilation regulatory protein NtrC; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. | Nitrogen regulation protein NtrY. | 0.786 |
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