STRINGSTRING
rnhB rnhB AEI07823.1 AEI07823.1 AEI07672.1 AEI07672.1 AEI07667.1 AEI07667.1 rnhA2 rnhA2 AEI07137.1 AEI07137.1 AEI06920.1 AEI06920.1 AEI06896.1 AEI06896.1 rnd rnd AEI06354.1 AEI06354.1 ruvC ruvC rnhA1 rnhA1 polA polA AEI05246.1 AEI05246.1 dnaQ dnaQ AEI04811.1 AEI04811.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rnhBRibonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (259 aa)
AEI07823.1Hypothetical protein. (178 aa)
AEI07672.1Hypothetical protein. (120 aa)
AEI07667.1Putative transposase. (326 aa)
rnhA2Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (255 aa)
AEI07137.1Hypothetical protein. (174 aa)
AEI06920.1Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. (204 aa)
AEI06896.1Integrase, catalytic core. (241 aa)
rndRibonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. (386 aa)
AEI06354.1Hypothetical protein. (184 aa)
ruvCHolliday junction DNA nuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. (171 aa)
rnhA1Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (149 aa)
polADNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. (1003 aa)
AEI05246.1Integrase. (282 aa)
dnaQDNA polymerase III subunit epsilon; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease. (230 aa)
AEI04811.13'-5' exonuclease. (204 aa)
Your Current Organism:
Oligotropha carboxidovorans
NCBI taxonomy Id: 504832
Other names: O. carboxidovorans OM5, Oligotropha carboxidovorans OM5, Oligotropha carboxidovorans str. OM5, Oligotropha carboxidovorans strain OM5
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