STRINGSTRING
queH queH OBX09124.1 OBX09124.1 relA relA OBX09126.1 OBX09126.1 OBX09127.1 OBX09127.1 rlmD rlmD recO recO OBX09130.1 OBX09130.1 OBX09131.1 OBX09131.1 OBX09165.1 OBX09165.1 OBX09132.1 OBX09132.1 OBX09133.1 OBX09133.1 dsbB dsbB OBX08147.1 OBX08147.1 OBX07617.1 OBX07617.1 OBX07618.1 OBX07618.1 rnhB rnhB OBX07350.1 OBX07350.1 OBX07351.1 OBX07351.1 OBX07352.1 OBX07352.1 glnE glnE OBX04650.1 OBX04650.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
queHHypothetical protein; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr). (237 aa)
OBX09124.1Diacylglycerol kinase; Recycling of diacylglycerol produced during the turnover of membrane phospholipid. (118 aa)
relA(p)ppGpp synthetase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. (741 aa)
OBX09126.1DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Nudix hydrolase family. (128 aa)
OBX09127.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (679 aa)
rlmD23S rRNA methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily. (437 aa)
recODNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. (239 aa)
OBX09130.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (84 aa)
OBX09131.1RNA polymerase sigma factor RpoE; Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (191 aa)
OBX09165.1anti-RNA polymerase sigma factor SigE; An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic protea [...] (187 aa)
OBX09132.1Negative regulator of sigmaE; Derived by automated computational analysis using gene prediction method: Protein Homology. (319 aa)
OBX09133.1SoxR reducing system protein RseC; Derived by automated computational analysis using gene prediction method: Protein Homology. (144 aa)
dsbBDisulfide bond formation protein DsbB; Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein; Belongs to the DsbB family. (180 aa)
OBX08147.1Thiol:disulfide interchange protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (212 aa)
OBX07617.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (420 aa)
OBX07618.1ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (267 aa)
rnhBRibonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (195 aa)
OBX07350.1Protein-disulfide isomerase; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily. (228 aa)
OBX07351.1ssDNA exonuclease RecJ; 5'-3' single-stranded-DNA-specific exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (572 aa)
OBX07352.1Thiol:disulfide interchange signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (222 aa)
glnEGlutamine-synthetase adenylyltransferase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transducti [...] (969 aa)
OBX04650.1Exopolyphosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GppA/Ppx family. (484 aa)
Your Current Organism:
Gallibacterium salpingitidis
NCBI taxonomy Id: 505341
Other names: CCUG 15564, CCUG 36325, G. salpingitidis, Gallibacterium salpingitidis Bisgaard et al. 2009, Gallibacterium sp. 18469/18, Gallibacterium sp. 19987/2, Gallibacterium sp. BK1010/1, Gallibacterium sp. F150, NCTC 11414, strain F150
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