11 items (Penicillium griseofulvum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PGRI_089090	Succinate-CoA ligase subunit beta. (418 aa)
	PGRI_077400	ATP-grasp fold, subdomain 1. (2276 aa)
	PGRI_072150	Carbamoyl-phosphate synthase, large subunit. (1166 aa)
	PGRI_008770	Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. (704 aa)
	PGRI_000560	Phosphoribosylaminoimidazole carboxylase; In the C-terminal section; belongs to the AIR carboxylase family. Class I subfamily. (572 aa)
	PGRI_081640	ATP-grasp fold, subdomain 1. (2218 aa)
	PGRI_079520	ATP-grasp fold, subdomain 1. (637 aa)
	PGRI_068030	Phosphoribosylglycinamide synthetase, C-domain. (802 aa)
	PGRI_023730	ATP-grasp fold, subdomain 1. (386 aa)
	PGRI_018890	ATP-grasp fold, subdomain 1. (366 aa)
	PGRI_049910	ATP-grasp fold, subdomain 1. (374 aa)

Your Current Organism:

Penicillium griseofulvum

NCBI taxonomy Id: 5078
Other names: CBS 185.27, P. griseofulvum, Penicillium patulum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PGRI_000560	PGRI_068030	A0A135LVM7	A0A135LQK6	Phosphoribosylaminoimidazole carboxylase; In the C-terminal section; belongs to the AIR carboxylase family. Class I subfamily.	Phosphoribosylglycinamide synthetase, C-domain.	0.996
PGRI_000560	PGRI_077400	A0A135LVM7	A0A135M051	Phosphoribosylaminoimidazole carboxylase; In the C-terminal section; belongs to the AIR carboxylase family. Class I subfamily.	ATP-grasp fold, subdomain 1.	0.644
PGRI_000560	PGRI_081640	A0A135LVM7	A0A135LVE4	Phosphoribosylaminoimidazole carboxylase; In the C-terminal section; belongs to the AIR carboxylase family. Class I subfamily.	ATP-grasp fold, subdomain 1.	0.401
PGRI_008770	PGRI_077400	A0A135LXY1	A0A135M051	Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.	ATP-grasp fold, subdomain 1.	0.915
PGRI_068030	PGRI_000560	A0A135LQK6	A0A135LVM7	Phosphoribosylglycinamide synthetase, C-domain.	Phosphoribosylaminoimidazole carboxylase; In the C-terminal section; belongs to the AIR carboxylase family. Class I subfamily.	0.996
PGRI_068030	PGRI_072150	A0A135LQK6	A0A135LYS6	Phosphoribosylglycinamide synthetase, C-domain.	Carbamoyl-phosphate synthase, large subunit.	0.798
PGRI_068030	PGRI_077400	A0A135LQK6	A0A135M051	Phosphoribosylglycinamide synthetase, C-domain.	ATP-grasp fold, subdomain 1.	0.804
PGRI_068030	PGRI_081640	A0A135LQK6	A0A135LVE4	Phosphoribosylglycinamide synthetase, C-domain.	ATP-grasp fold, subdomain 1.	0.798
PGRI_072150	PGRI_068030	A0A135LYS6	A0A135LQK6	Carbamoyl-phosphate synthase, large subunit.	Phosphoribosylglycinamide synthetase, C-domain.	0.798
PGRI_072150	PGRI_077400	A0A135LYS6	A0A135M051	Carbamoyl-phosphate synthase, large subunit.	ATP-grasp fold, subdomain 1.	0.700
PGRI_072150	PGRI_081640	A0A135LYS6	A0A135LVE4	Carbamoyl-phosphate synthase, large subunit.	ATP-grasp fold, subdomain 1.	0.920
PGRI_077400	PGRI_000560	A0A135M051	A0A135LVM7	ATP-grasp fold, subdomain 1.	Phosphoribosylaminoimidazole carboxylase; In the C-terminal section; belongs to the AIR carboxylase family. Class I subfamily.	0.644
PGRI_077400	PGRI_008770	A0A135M051	A0A135LXY1	ATP-grasp fold, subdomain 1.	Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.	0.915
PGRI_077400	PGRI_068030	A0A135M051	A0A135LQK6	ATP-grasp fold, subdomain 1.	Phosphoribosylglycinamide synthetase, C-domain.	0.804
PGRI_077400	PGRI_072150	A0A135M051	A0A135LYS6	ATP-grasp fold, subdomain 1.	Carbamoyl-phosphate synthase, large subunit.	0.700
PGRI_077400	PGRI_081640	A0A135M051	A0A135LVE4	ATP-grasp fold, subdomain 1.	ATP-grasp fold, subdomain 1.	0.704
PGRI_077400	PGRI_089090	A0A135M051	A0A135LRC4	ATP-grasp fold, subdomain 1.	Succinate-CoA ligase subunit beta.	0.915
PGRI_081640	PGRI_000560	A0A135LVE4	A0A135LVM7	ATP-grasp fold, subdomain 1.	Phosphoribosylaminoimidazole carboxylase; In the C-terminal section; belongs to the AIR carboxylase family. Class I subfamily.	0.401
PGRI_081640	PGRI_068030	A0A135LVE4	A0A135LQK6	ATP-grasp fold, subdomain 1.	Phosphoribosylglycinamide synthetase, C-domain.	0.798
PGRI_081640	PGRI_072150	A0A135LVE4	A0A135LYS6	ATP-grasp fold, subdomain 1.	Carbamoyl-phosphate synthase, large subunit.	0.920