40 items (Penicillium griseofulvum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PGRI_027520	Spindle pole body component. (1032 aa)
	PGRI_078500	Protein kinase domain-containing protein. (1057 aa)
	PGRI_076570	Tetratricopeptide-like helical. (562 aa)
	PGRI_076460	Protein phosphatase methylesterase 1; Demethylates proteins that have been reversibly carboxymethylated. (448 aa)
	PGRI_071940	Protein kinase domain-containing protein. (466 aa)
	PGRI_002350	Uncharacterized protein. (996 aa)
	PGRI_001790	Dynamitin subunit 2. (479 aa)
	PGRI_080980	Serine/threonine-protein phosphatase. (329 aa)
	PGRI_086690	Zinc finger, RING-type. (117 aa)
	PGRI_085900	BZIP domain-containing protein. (243 aa)
	PGRI_085290	Carotenoid oxygenase. (536 aa)
	PGRI_084220	Protein phosphatase PP2A regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (499 aa)
	PGRI_083910	Myosin tail 2; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1255 aa)
	PGRI_083720	Serine/threonine-protein kinase. (1142 aa)
	PGRI_083610	Metallophos domain-containing protein. (660 aa)
	PGRI_090080	Uncharacterized protein. (79 aa)
	PGRI_066850	M-phase inducer phosphatase. (503 aa)
	PGRI_064090	Uncharacterized protein. (812 aa)
	PGRI_044670	Cutinase. (633 aa)
	PGRI_062390	Uncharacterized protein. (360 aa)
	PGRI_061950	Metallophos domain-containing protein. (333 aa)
	PGRI_061130	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (480 aa)
	PGRI_061240	BZIP domain-containing protein. (549 aa)
	PGRI_061050	Uncharacterized protein. (855 aa)
	PGRI_058200	Spindle pole body component. (871 aa)
	PGRI_032530	DASH complex, subunit Ask1. (438 aa)
	PGRI_029650	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome. (457 aa)
	PGRI_029220	Spindle pole body component. (953 aa)
	PGRI_027460	Ribosomal protein S27a. (154 aa)
	PGRI_026630	Uncharacterized protein. (246 aa)
	PGRI_026620	Uncharacterized protein. (702 aa)
	PGRI_026270	Uncharacterized protein. (376 aa)
	PGRI_025840	Spindle associated. (1210 aa)
	PGRI_022390	Dynein associated protein. (1367 aa)
	PGRI_016610	Spindle pole body component. (775 aa)
	PGRI_038970	Uncharacterized protein. (572 aa)
	PGRI_037540	Uncharacterized protein. (615 aa)
	PGRI_036500	Carotenoid oxygenase. (182 aa)
	PGRI_051300	Spindle pole body component. (887 aa)
	PGRI_078630	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (388 aa)

Your Current Organism:

Penicillium griseofulvum

NCBI taxonomy Id: 5078
Other names: CBS 185.27, P. griseofulvum, Penicillium patulum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PGRI_001790	PGRI_002350	A0A135LW14	A0A135LW61	Dynamitin subunit 2.	Uncharacterized protein.	0.490
PGRI_001790	PGRI_022390	A0A135LW14	A0A135LHE8	Dynamitin subunit 2.	Dynein associated protein.	0.999
PGRI_001790	PGRI_026630	A0A135LW14	A0A135LIK0	Dynamitin subunit 2.	Uncharacterized protein.	0.810
PGRI_001790	PGRI_083720	A0A135LW14	A0A135LSY3	Dynamitin subunit 2.	Serine/threonine-protein kinase.	0.737
PGRI_002350	PGRI_001790	A0A135LW61	A0A135LW14	Uncharacterized protein.	Dynamitin subunit 2.	0.490
PGRI_002350	PGRI_025840	A0A135LW61	A0A135LID5	Uncharacterized protein.	Spindle associated.	0.537
PGRI_002350	PGRI_026630	A0A135LW61	A0A135LIK0	Uncharacterized protein.	Uncharacterized protein.	0.959
PGRI_002350	PGRI_027520	A0A135LW61	A0A135LIT5	Uncharacterized protein.	Spindle pole body component.	0.532
PGRI_002350	PGRI_029650	A0A135LW61	A0A135LJE9	Uncharacterized protein.	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	0.628
PGRI_002350	PGRI_051300	A0A135LW61	A0A135LBE0	Uncharacterized protein.	Spindle pole body component.	0.689
PGRI_002350	PGRI_061050	A0A135LW61	A0A135LMF2	Uncharacterized protein.	Uncharacterized protein.	0.659
PGRI_002350	PGRI_061130	A0A135LW61	A0A135LMH9	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.663
PGRI_002350	PGRI_078500	A0A135LW61	A0A135M0G0	Uncharacterized protein.	Protein kinase domain-containing protein.	0.944
PGRI_002350	PGRI_078630	A0A135LW61	A0A135M0H2	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.663
PGRI_002350	PGRI_083720	A0A135LW61	A0A135LSY3	Uncharacterized protein.	Serine/threonine-protein kinase.	0.854
PGRI_016610	PGRI_027520	A0A135LFM4	A0A135LIT5	Spindle pole body component.	Spindle pole body component.	0.994
PGRI_016610	PGRI_029220	A0A135LFM4	A0A135LJ98	Spindle pole body component.	Spindle pole body component.	0.991
PGRI_016610	PGRI_029650	A0A135LFM4	A0A135LJE9	Spindle pole body component.	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	0.987
PGRI_016610	PGRI_032530	A0A135LFM4	A0A135LK86	Spindle pole body component.	DASH complex, subunit Ask1.	0.920
PGRI_016610	PGRI_051300	A0A135LFM4	A0A135LBE0	Spindle pole body component.	Spindle pole body component.	0.989