10 items (Penicillium griseofulvum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PGRI_058450	ATP-grasp fold, subdomain 1. (712 aa)
	PGRI_060040	ATP-grasp fold, subdomain 1. (667 aa)
	PGRI_079520	ATP-grasp fold, subdomain 1. (637 aa)
	PGRI_036080	ATP-grasp fold, subdomain 2. (585 aa)
	PGRI_049910	ATP-grasp fold, subdomain 1. (374 aa)
	PGRI_081640	ATP-grasp fold, subdomain 1. (2218 aa)
	PGRI_072150	Carbamoyl-phosphate synthase, large subunit. (1166 aa)
	PGRI_000560	Phosphoribosylaminoimidazole carboxylase; In the C-terminal section; belongs to the AIR carboxylase family. Class I subfamily. (572 aa)
	PGRI_018890	ATP-grasp fold, subdomain 1. (366 aa)
	PGRI_023730	ATP-grasp fold, subdomain 1. (386 aa)

Your Current Organism:

Penicillium griseofulvum

NCBI taxonomy Id: 5078
Other names: CBS 185.27, P. griseofulvum, Penicillium patulum

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PGRI_000560	PGRI_081640	A0A135LVM7	A0A135LVE4	Phosphoribosylaminoimidazole carboxylase; In the C-terminal section; belongs to the AIR carboxylase family. Class I subfamily.	ATP-grasp fold, subdomain 1.	0.401
PGRI_058450	PGRI_060040	A0A135LLN3	A0A135LM43	ATP-grasp fold, subdomain 1.	ATP-grasp fold, subdomain 1.	0.797
PGRI_060040	PGRI_058450	A0A135LM43	A0A135LLN3	ATP-grasp fold, subdomain 1.	ATP-grasp fold, subdomain 1.	0.797
PGRI_072150	PGRI_081640	A0A135LYS6	A0A135LVE4	Carbamoyl-phosphate synthase, large subunit.	ATP-grasp fold, subdomain 1.	0.920
PGRI_081640	PGRI_000560	A0A135LVE4	A0A135LVM7	ATP-grasp fold, subdomain 1.	Phosphoribosylaminoimidazole carboxylase; In the C-terminal section; belongs to the AIR carboxylase family. Class I subfamily.	0.401
PGRI_081640	PGRI_072150	A0A135LVE4	A0A135LYS6	ATP-grasp fold, subdomain 1.	Carbamoyl-phosphate synthase, large subunit.	0.920