(11 nodes) Mixed, incl. Secretion, and Regulation of growth network (Pedobacter sp. V48)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ETZ21089.1	Membrane protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (179 aa)
	ETZ21226.1	Orotate phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (132 aa)
	ETZ20413.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (205 aa)
	ETZ19820.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (140 aa)
	ETZ19883.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (348 aa)
	ETZ19982.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (671 aa)
	ETZ19615.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (359 aa)
	ETZ19366.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (389 aa)
	ETZ19450.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (238 aa)
	ETZ21327.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1419 aa)
	ETZ21330.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (126 aa)

Your Current Organism:

Pedobacter sp. V48

NCBI taxonomy Id: 509635
Other names: P. sp. V48

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ETZ19366.1	ETZ19450.1	N824_11530	N824_11955	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.709
ETZ19366.1	ETZ19820.1	N824_11530	N824_06310	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.609
ETZ19366.1	ETZ19883.1	N824_11530	N824_06655	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.624
ETZ19366.1	ETZ19982.1	N824_11530	N824_07160	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.752
ETZ19366.1	ETZ20413.1	N824_11530	N824_05365	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.466
ETZ19366.1	ETZ21089.1	N824_11530	N824_02940	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Membrane protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.551
ETZ19366.1	ETZ21226.1	N824_11530	N824_03640	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Orotate phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.753
ETZ19366.1	ETZ21327.1	N824_11530	N824_29160	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.658
ETZ19450.1	ETZ19366.1	N824_11955	N824_11530	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.709
ETZ19450.1	ETZ19615.1	N824_11955	N824_09090	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.585
ETZ19450.1	ETZ19820.1	N824_11955	N824_06310	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.624
ETZ19450.1	ETZ19883.1	N824_11955	N824_06655	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.583
ETZ19450.1	ETZ19982.1	N824_11955	N824_07160	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.725
ETZ19450.1	ETZ20413.1	N824_11955	N824_05365	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.576
ETZ19450.1	ETZ21089.1	N824_11955	N824_02940	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Membrane protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.601
ETZ19450.1	ETZ21226.1	N824_11955	N824_03640	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Orotate phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.760
ETZ19450.1	ETZ21327.1	N824_11955	N824_29160	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.674
ETZ19615.1	ETZ19450.1	N824_09090	N824_11955	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.585
ETZ19615.1	ETZ21226.1	N824_09090	N824_03640	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Orotate phosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.471
ETZ19615.1	ETZ21327.1	N824_09090	N824_29160	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.895