(4 nodes) Fumarylacetoacetate (FAA) hydrolase family network (Pedobacter sp. V48)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ETZ24482.1	Ureidoglycolate lyase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (285 aa)
	ETZ20577.1	2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (203 aa)
	ETZ22256.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (283 aa)
	ETZ23273.1	Fumarylacetoacetate hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (332 aa)

Your Current Organism:

Pedobacter sp. V48

NCBI taxonomy Id: 509635
Other names: P. sp. V48

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ETZ20577.1	ETZ23273.1	N824_06220	N824_17580	2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Fumarylacetoacetate hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.892
ETZ23273.1	ETZ20577.1	N824_17580	N824_06220	Fumarylacetoacetate hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.892
ETZ23273.1	ETZ24482.1	N824_17580	N824_13260	Fumarylacetoacetate hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Ureidoglycolate lyase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.500
ETZ24482.1	ETZ23273.1	N824_13260	N824_17580	Ureidoglycolate lyase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Fumarylacetoacetate hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.500