(15 nodes) Tyrosine metabolism network (Pedobacter sp. V48)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ETZ19443.1	Aminotransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (417 aa)
	ETZ20577.1	2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (203 aa)
	ETZ20532.1	Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the aldehyde dehydrogenase family. (454 aa)
	ETZ21203.1	Aspartate aminotransferase; Catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (400 aa)
	ETZ20994.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (401 aa)
	ETZ21730.1	Aminotransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (401 aa)
	ETZ21549.1	Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (397 aa)
	ETZ22226.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (312 aa)
	ETZ22225.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (148 aa)
	ETZ23498.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (208 aa)
	ETZ23496.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (90 aa)
	hisC	Histidinol-phosphate aminotransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. (370 aa)
	ETZ23273.1	Fumarylacetoacetate hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (332 aa)
	ETZ23272.1	Homogentisate 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (388 aa)
	ETZ23271.1	4-hydroxyphenylpyruvate dioxygenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (376 aa)

Your Current Organism:

Pedobacter sp. V48

NCBI taxonomy Id: 509635
Other names: P. sp. V48

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ETZ19443.1	ETZ20994.1	N824_11920	N824_02455	Aminotransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.822
ETZ19443.1	ETZ21203.1	N824_11920	N824_03525	Aminotransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Aspartate aminotransferase; Catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.877
ETZ19443.1	ETZ21549.1	N824_11920	N824_27825	Aminotransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.819
ETZ19443.1	ETZ21730.1	N824_11920	N824_26200	Aminotransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Aminotransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.772
ETZ19443.1	ETZ23271.1	N824_11920	N824_17570	Aminotransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	4-hydroxyphenylpyruvate dioxygenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.869
ETZ19443.1	hisC	N824_11920	N824_17950	Aminotransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Histidinol-phosphate aminotransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.	0.823
ETZ20577.1	ETZ23272.1	N824_06220	N824_17575	2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Homogentisate 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.688
ETZ20577.1	ETZ23273.1	N824_06220	N824_17580	2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Fumarylacetoacetate hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.892
ETZ20994.1	ETZ19443.1	N824_02455	N824_11920	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Aminotransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.822
ETZ20994.1	ETZ21203.1	N824_02455	N824_03525	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Aspartate aminotransferase; Catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.818
ETZ20994.1	ETZ21730.1	N824_02455	N824_26200	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Aminotransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.644
ETZ20994.1	ETZ23271.1	N824_02455	N824_17570	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	4-hydroxyphenylpyruvate dioxygenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.801
ETZ20994.1	hisC	N824_02455	N824_17950	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Histidinol-phosphate aminotransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.	0.783
ETZ21203.1	ETZ19443.1	N824_03525	N824_11920	Aspartate aminotransferase; Catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Aminotransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.877
ETZ21203.1	ETZ20994.1	N824_03525	N824_02455	Aspartate aminotransferase; Catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.818
ETZ21203.1	ETZ21549.1	N824_03525	N824_27825	Aspartate aminotransferase; Catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.820
ETZ21203.1	ETZ21730.1	N824_03525	N824_26200	Aspartate aminotransferase; Catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Aminotransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.772
ETZ21203.1	ETZ23271.1	N824_03525	N824_17570	Aspartate aminotransferase; Catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	4-hydroxyphenylpyruvate dioxygenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.883
ETZ21203.1	hisC	N824_03525	N824_17950	Aspartate aminotransferase; Catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Histidinol-phosphate aminotransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.	0.873
ETZ21549.1	ETZ19443.1	N824_27825	N824_11920	Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Aminotransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.819