(10 nodes) Mixed, incl. Periodic partitioning, and Ground-like domain network (Necator americanus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NECAME_19442	Ground-like domain protein. (99 aa)
	NECAME_14321	Uncharacterized protein. (157 aa)
	NECAME_19088	Uncharacterized protein. (62 aa)
	NECAME_14320	Uncharacterized protein. (76 aa)
	NECAME_14175	Uncharacterized protein. (152 aa)
	NECAME_12130	Uncharacterized protein. (210 aa)
	NECAME_12128	Hint domain-containing protein. (102 aa)
	NECAME_10879	Uncharacterized protein. (106 aa)
	NECAME_07545	Uncharacterized protein. (128 aa)
	NECAME_07537	Uncharacterized protein. (175 aa)

Your Current Organism:

Necator americanus

NCBI taxonomy Id: 51031
Other names: N. americanus

Send network to Cytoscape

Export your current network:

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file format is 'PNG': portable network graphic

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NECAME_07537	NECAME_07545	W2TQ67	W2TM42	Uncharacterized protein.	Uncharacterized protein.	0.999
NECAME_07537	NECAME_10879	W2TQ67	W2T6X1	Uncharacterized protein.	Uncharacterized protein.	0.601
NECAME_07537	NECAME_12128	W2TQ67	W2T3J9	Uncharacterized protein.	Hint domain-containing protein.	0.826
NECAME_07537	NECAME_12130	W2TQ67	W2T1N0	Uncharacterized protein.	Uncharacterized protein.	0.826
NECAME_07537	NECAME_14175	W2TQ67	W2SS69	Uncharacterized protein.	Uncharacterized protein.	0.999
NECAME_07537	NECAME_14320	W2TQ67	W2SQZ1	Uncharacterized protein.	Uncharacterized protein.	0.429
NECAME_07537	NECAME_14321	W2TQ67	W2SNK0	Uncharacterized protein.	Uncharacterized protein.	0.429
NECAME_07537	NECAME_19088	W2TQ67	W2SQP8	Uncharacterized protein.	Uncharacterized protein.	0.826
NECAME_07537	NECAME_19442	W2TQ67	W2SN70	Uncharacterized protein.	Ground-like domain protein.	0.601
NECAME_07545	NECAME_07537	W2TM42	W2TQ67	Uncharacterized protein.	Uncharacterized protein.	0.999
NECAME_07545	NECAME_10879	W2TM42	W2T6X1	Uncharacterized protein.	Uncharacterized protein.	0.737
NECAME_07545	NECAME_12128	W2TM42	W2T3J9	Uncharacterized protein.	Hint domain-containing protein.	0.614
NECAME_07545	NECAME_12130	W2TM42	W2T1N0	Uncharacterized protein.	Uncharacterized protein.	0.614
NECAME_07545	NECAME_14175	W2TM42	W2SS69	Uncharacterized protein.	Uncharacterized protein.	0.999
NECAME_07545	NECAME_14320	W2TM42	W2SQZ1	Uncharacterized protein.	Uncharacterized protein.	0.612
NECAME_07545	NECAME_14321	W2TM42	W2SNK0	Uncharacterized protein.	Uncharacterized protein.	0.612
NECAME_07545	NECAME_19088	W2TM42	W2SQP8	Uncharacterized protein.	Uncharacterized protein.	0.614
NECAME_07545	NECAME_19442	W2TM42	W2SN70	Uncharacterized protein.	Ground-like domain protein.	0.737
NECAME_10879	NECAME_07537	W2T6X1	W2TQ67	Uncharacterized protein.	Uncharacterized protein.	0.601
NECAME_10879	NECAME_07545	W2T6X1	W2TM42	Uncharacterized protein.	Uncharacterized protein.	0.737