(24 nodes) Mixed, incl. UBX domain, and Josephin domain DUBs network (Necator americanus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NECAME_05342	PUB domain protein. (567 aa)
	NECAME_15601	Uncharacterized protein. (130 aa)
	NECAME_15602	Uncharacterized protein. (89 aa)
	NECAME_14953	UBX domain protein. (527 aa)
	NECAME_13329	WD domain, G-beta repeat protein. (245 aa)
	NECAME_13328	PUL domain protein. (603 aa)
	NECAME_13629	Transglutaminase-like protein. (361 aa)
	NECAME_13260	UBX domain protein. (451 aa)
	NECAME_04155	Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family. (809 aa)
	NECAME_12620	DNA repair protein Rad4. (986 aa)
	NECAME_03713	Uncharacterized protein. (515 aa)
	NECAME_11888	EF hand. (90 aa)
	NECAME_11558	Ubiquitin family protein. (120 aa)
	NECAME_11557	Uncharacterized protein. (448 aa)
	NECAME_11016	Uncharacterized protein. (75 aa)
	NECAME_09377	U-box domain protein. (1018 aa)
	NECAME_02265	UBX domain-containing protein. (451 aa)
	NECAME_00271	Uncharacterized protein. (65 aa)
	NECAME_00270	Uncharacterized protein. (145 aa)
	NECAME_00272	ATPase, AAA family; Belongs to the AAA ATPase family. (373 aa)
	NECAME_08175	Nuclear protein localization protein 4-like protein. (514 aa)
	NECAME_17243	Ubiquitin family protein. (130 aa)
	NECAME_17244	XPC-binding domain protein. (189 aa)
	NECAME_16108	SEP domain protein. (332 aa)

Your Current Organism:

Necator americanus

NCBI taxonomy Id: 51031
Other names: N. americanus

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NECAME_00270	NECAME_02265	W2TJW6	W2TI73	Uncharacterized protein.	UBX domain-containing protein.	0.775
NECAME_00270	NECAME_03713	W2TJW6	W2T0U9	Uncharacterized protein.	Uncharacterized protein.	0.756
NECAME_00270	NECAME_05342	W2TJW6	W2SI15	Uncharacterized protein.	PUB domain protein.	0.727
NECAME_00270	NECAME_08175	W2TJW6	W2TLR2	Uncharacterized protein.	Nuclear protein localization protein 4-like protein.	0.908
NECAME_00270	NECAME_09377	W2TJW6	W2TG20	Uncharacterized protein.	U-box domain protein.	0.799
NECAME_00270	NECAME_11016	W2TJW6	W2T8F0	Uncharacterized protein.	Uncharacterized protein.	0.791
NECAME_00270	NECAME_11557	W2TJW6	W2T6I6	Uncharacterized protein.	Uncharacterized protein.	0.456
NECAME_00270	NECAME_11558	W2TJW6	W2T3X5	Uncharacterized protein.	Ubiquitin family protein.	0.456
NECAME_00270	NECAME_13260	W2TJW6	W2SYN1	Uncharacterized protein.	UBX domain protein.	0.617
NECAME_00270	NECAME_13328	W2TJW6	W2SWM8	Uncharacterized protein.	PUL domain protein.	0.629
NECAME_00270	NECAME_13329	W2TJW6	W2SVY7	Uncharacterized protein.	WD domain, G-beta repeat protein.	0.629
NECAME_00270	NECAME_13629	W2TJW6	W2SWR1	Uncharacterized protein.	Transglutaminase-like protein.	0.911
NECAME_00270	NECAME_14953	W2TJW6	W2SN52	Uncharacterized protein.	UBX domain protein.	0.785
NECAME_00270	NECAME_15601	W2TJW6	W2SIZ0	Uncharacterized protein.	Uncharacterized protein.	0.814
NECAME_00270	NECAME_15602	W2TJW6	W2SJB2	Uncharacterized protein.	Uncharacterized protein.	0.814
NECAME_00270	NECAME_16108	W2TJW6	W2TYW3	Uncharacterized protein.	SEP domain protein.	0.899
NECAME_00270	NECAME_17243	W2TJW6	W2TQP7	Uncharacterized protein.	Ubiquitin family protein.	0.654
NECAME_00270	NECAME_17244	W2TJW6	W2TR16	Uncharacterized protein.	XPC-binding domain protein.	0.654
NECAME_00271	NECAME_02265	W2TIJ9	W2TI73	Uncharacterized protein.	UBX domain-containing protein.	0.775
NECAME_00271	NECAME_03713	W2TIJ9	W2T0U9	Uncharacterized protein.	Uncharacterized protein.	0.756