(106 nodes) Nuclear body network (Necator americanus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NECAME_18862	Uncharacterized protein. (74 aa)
	NECAME_05671	Uncharacterized protein. (333 aa)
	NECAME_15914	RRM domain-containing protein. (365 aa)
	NECAME_05582	Uncharacterized protein. (256 aa)
	NECAME_05568	Uncharacterized protein. (477 aa)
	NECAME_05621	RRM domain-containing protein. (177 aa)
	NECAME_05578	HAD hydrolase, family IE. (490 aa)
	NECAME_05672	Uncharacterized protein. (237 aa)
	NECAME_05569	Spore coat protein YeeK domain protein. (137 aa)
	NECAME_05248	Zinc finger, C2H2 type. (247 aa)
	NECAME_15264	Uncharacterized protein. (176 aa)
	NECAME_15082	FRG1-like family protein. (236 aa)
	NECAME_15052	Uncharacterized protein. (206 aa)
	NECAME_14954	Cwf21. (393 aa)
	NECAME_15262	BRCT domain-containing protein. (125 aa)
	NECAME_05247	Uncharacterized protein. (163 aa)
	NECAME_04887	WD domain, G-beta repeat protein. (266 aa)
	NECAME_15053	Uncharacterized protein. (58 aa)
	NECAME_15054	Uncharacterized protein. (204 aa)
	NECAME_14471	Uncharacterized protein. (257 aa)
	NECAME_01050	HMG box. (348 aa)
	NECAME_00863	Uncharacterized protein. (366 aa)
	NECAME_14472	Uncharacterized protein. (134 aa)
	NECAME_14000	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (304 aa)
	NECAME_14085	DH domain-containing protein. (146 aa)
	NECAME_00896	Uncharacterized protein. (646 aa)
	NECAME_13991	Uncharacterized protein. (116 aa)
	NECAME_18904	Uncharacterized protein. (74 aa)
	NECAME_04576	Uncharacterized protein. (627 aa)
	NECAME_13990	C2H2-type domain-containing protein. (272 aa)
	NECAME_18396	Uncharacterized protein. (90 aa)
	NECAME_13522	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (493 aa)
	NECAME_04226	Dual specificity phosphatase, catalytic domain protein. (282 aa)
	NECAME_13710	Zinc finger, C3HC4 type. (362 aa)
	NECAME_13278	PWI domain protein. (440 aa)
	NECAME_18553	Uncharacterized protein. (61 aa)
	NECAME_13195	Uncharacterized protein. (73 aa)
	NECAME_04390	Survival motor neuron protein. (185 aa)
	NECAME_13194	Uncharacterized protein. (162 aa)
	NECAME_00785	HSF-type DNA-binding domain protein. (256 aa)
	NECAME_00786	CASC3/Barentsz eIF4AIII binding protein. (506 aa)
	NECAME_03941	RRM domain-containing protein. (309 aa)
	NECAME_13230	SprT-like domain-containing protein. (229 aa)
	NECAME_12936	Uncharacterized protein. (200 aa)
	NECAME_12937	Uncharacterized protein. (140 aa)
	NECAME_12291	Uncharacterized protein. (157 aa)
	NECAME_12216	Uncharacterized protein. (201 aa)
	NECAME_03854	RRM domain-containing protein. (280 aa)
	NECAME_00672	Uncharacterized protein. (197 aa)
	NECAME_12217	RRM domain-containing protein. (226 aa)
	NECAME_11954	Uncharacterized protein. (168 aa)
	NECAME_12021	RRM domain-containing protein. (230 aa)
	NECAME_11955	Uncharacterized protein. (396 aa)
	NECAME_12293	Uncharacterized protein. (129 aa)
	NECAME_03344	Pre-mRNA processing factor 4 like protein. (269 aa)
	NECAME_11483	SH3-binding, glutamic acid-rich protein. (134 aa)
	NECAME_03319	Ankyrin repeat protein. (628 aa)
	NECAME_00439	WW domain protein. (274 aa)
	NECAME_11739	Uncharacterized protein. (82 aa)
	NECAME_11358	Uncharacterized protein. (489 aa)
	NECAME_10611	CW-type Zinc Finger. (976 aa)
	NECAME_03129	Uncharacterized protein. (424 aa)
	NECAME_10284	ELAV/HuD family splicing factor. (478 aa)
	NECAME_03130	Ubiquitin--protein ligase. (1005 aa)
	NECAME_10364	Uncharacterized protein. (61 aa)
	NECAME_10751	Uncharacterized protein. (222 aa)
	NECAME_10506	FHA domain protein. (320 aa)
	NECAME_02727	Gemin6 protein. (166 aa)
	NECAME_10111	Endonuclease/exonuclease/phosphatase family protein. (367 aa)
	NECAME_00403	Uncharacterized protein. (308 aa)
	NECAME_02598	Prp18 domain protein. (370 aa)
	NECAME_09153	Uncharacterized protein. (254 aa)
	NECAME_02559	Nicotinate phosphoribosyltransferase, (NAPRTase) family. (472 aa)
	NECAME_09151	Uncharacterized protein. (240 aa)
	NECAME_09156	Uncharacterized protein. (236 aa)
	NECAME_09521	PID domain-containing protein. (162 aa)
	NECAME_08942	Uncharacterized protein. (852 aa)
	NECAME_08752	Zinc finger, C2H2 type. (277 aa)
	NECAME_09154	Uncharacterized protein. (238 aa)
	NECAME_08766	Uncharacterized protein. (150 aa)
	NECAME_09155	Uncharacterized protein. (243 aa)
	NECAME_08326	Uncharacterized protein. (502 aa)
	NECAME_08040	RMI1_C domain-containing protein. (277 aa)
	NECAME_00221	Ubiquitin--protein ligase; Belongs to the ubiquitin-conjugating enzyme family. (238 aa)
	NECAME_08039	DUF1767 domain-containing protein. (336 aa)
	NECAME_01812	HDAg domain-containing protein. (287 aa)
	NECAME_07922	Uncharacterized protein. (507 aa)
	NECAME_01967	RRM domain-containing protein. (254 aa)
	NECAME_07379	Fibrillarin. (319 aa)
	NECAME_01811	Uncharacterized protein. (249 aa)
	NECAME_07631	HECT-domain protein. (2630 aa)
	NECAME_07552	RRM domain-containing protein. (290 aa)
	NECAME_06994	Uncharacterized protein. (334 aa)
	NECAME_07248	Uncharacterized protein. (693 aa)
	NECAME_06801	Uncharacterized protein. (91 aa)
	NECAME_06624	LSM domain protein. (74 aa)
	NECAME_06992	Uncharacterized protein. (181 aa)
	NECAME_06591	MI domain-containing protein. (599 aa)
	NECAME_06802	WD_REPEATS_REGION domain-containing protein. (669 aa)
	NECAME_06230	Zinc finger, C2H2 type. (225 aa)
	NECAME_06099	CAF1 family ribonuclease. (312 aa)
	NECAME_16340	Glycine C-acetyltransferase. (361 aa)
	NECAME_05827	Uncharacterized protein. (276 aa)
	NECAME_16468	Uncharacterized protein. (184 aa)
	NECAME_01303	HNF-1_N domain-containing protein. (291 aa)
	NECAME_05828	Uncharacterized protein. (211 aa)

Your Current Organism:

Necator americanus

NCBI taxonomy Id: 51031
Other names: N. americanus

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NECAME_00221	NECAME_03129	W2TL49	W2T933	Ubiquitin--protein ligase; Belongs to the ubiquitin-conjugating enzyme family.	Uncharacterized protein.	0.581
NECAME_00221	NECAME_03130	W2TL49	W2T9N7	Ubiquitin--protein ligase; Belongs to the ubiquitin-conjugating enzyme family.	Ubiquitin--protein ligase.	0.581
NECAME_00403	NECAME_00786	W2TCV3	W2SYI6	Uncharacterized protein.	CASC3/Barentsz eIF4AIII binding protein.	0.513
NECAME_00403	NECAME_03854	W2TCV3	W2T1K3	Uncharacterized protein.	RRM domain-containing protein.	0.668
NECAME_00403	NECAME_05578	W2TCV3	W2SFX4	Uncharacterized protein.	HAD hydrolase, family IE.	0.747
NECAME_00403	NECAME_05621	W2TCV3	W2SFX2	Uncharacterized protein.	RRM domain-containing protein.	0.807
NECAME_00403	NECAME_06624	W2TCV3	W2TS69	Uncharacterized protein.	LSM domain protein.	0.533
NECAME_00403	NECAME_09153	W2TCV3	W2TEK0	Uncharacterized protein.	Uncharacterized protein.	0.509
NECAME_00403	NECAME_09154	W2TCV3	W2TH11	Uncharacterized protein.	Uncharacterized protein.	0.471
NECAME_00403	NECAME_09155	W2TCV3	W2THI8	Uncharacterized protein.	Uncharacterized protein.	0.506
NECAME_00403	NECAME_12021	W2TCV3	W2T307	Uncharacterized protein.	RRM domain-containing protein.	0.807
NECAME_00403	NECAME_13278	W2TCV3	W2SW78	Uncharacterized protein.	PWI domain protein.	0.667
NECAME_00403	NECAME_13522	W2TCV3	W2SV94	Uncharacterized protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.806
NECAME_00403	NECAME_14954	W2TCV3	W2SKQ7	Uncharacterized protein.	Cwf21.	0.597
NECAME_00439	NECAME_00896	W2T5M9	W2SR84	WW domain protein.	Uncharacterized protein.	0.679
NECAME_00786	NECAME_00403	W2SYI6	W2TCV3	CASC3/Barentsz eIF4AIII binding protein.	Uncharacterized protein.	0.513
NECAME_00786	NECAME_03854	W2SYI6	W2T1K3	CASC3/Barentsz eIF4AIII binding protein.	RRM domain-containing protein.	0.494
NECAME_00786	NECAME_03941	W2SYI6	W2SZ09	CASC3/Barentsz eIF4AIII binding protein.	RRM domain-containing protein.	0.513
NECAME_00786	NECAME_05578	W2SYI6	W2SFX4	CASC3/Barentsz eIF4AIII binding protein.	HAD hydrolase, family IE.	0.625
NECAME_00786	NECAME_05621	W2SYI6	W2SFX2	CASC3/Barentsz eIF4AIII binding protein.	RRM domain-containing protein.	0.557