(22 nodes) Nuclear hormone receptor network (Necator americanus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NECAME_12247	Ligand-binding domain of nuclear hormone receptor. (304 aa)
	NECAME_16573	Zinc finger, C4 type. (390 aa)
	NECAME_16756	Ligand-binding domain of nuclear hormone receptor. (667 aa)
	NECAME_01552	Zinc finger, C4 type. (650 aa)
	NECAME_17683	Ligand-binding domain of nuclear hormone receptor. (461 aa)
	NECAME_01944	Ligand-binding domain of nuclear hormone receptor. (432 aa)
	NECAME_02072	Ligand-binding domain of nuclear hormone receptor. (226 aa)
	NECAME_08394	Zinc finger, C4 type. (469 aa)
	NECAME_02375	Zinc finger, C4 type. (546 aa)
	NECAME_09496	Zinc finger, C4 type. (370 aa)
	NECAME_03201	Ligand-binding domain of nuclear hormone receptor. (279 aa)
	NECAME_11708	Zinc finger, C4 type. (410 aa)
	NECAME_11442	Ligand-binding domain of nuclear hormone receptor. (229 aa)
	NECAME_11999	Zinc finger, C4 type. (391 aa)
	NECAME_12319	Zinc finger, C4 type. (458 aa)
	NECAME_00592	Zinc finger, C4 type. (500 aa)
	NECAME_12245	Ligand-binding domain of nuclear hormone receptor. (360 aa)
	NECAME_12696	Zinc finger, C4 type. (607 aa)
	NECAME_04023	Zinc finger, C4 type. (297 aa)
	NECAME_14196	Ligand-binding domain of nuclear hormone receptor. (470 aa)
	NECAME_00872	Ligand-binding domain of nuclear hormone receptor. (431 aa)
	NECAME_05125	Uncharacterized protein. (470 aa)

Your Current Organism:

Necator americanus

NCBI taxonomy Id: 51031
Other names: N. americanus

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NECAME_01552	NECAME_01944	W2TSF0	W2TLZ0	Zinc finger, C4 type.	Ligand-binding domain of nuclear hormone receptor.	0.724
NECAME_01552	NECAME_17683	W2TSF0	W2TNF8	Zinc finger, C4 type.	Ligand-binding domain of nuclear hormone receptor.	0.724
NECAME_01944	NECAME_01552	W2TLZ0	W2TSF0	Ligand-binding domain of nuclear hormone receptor.	Zinc finger, C4 type.	0.724
NECAME_01944	NECAME_17683	W2TLZ0	W2TNF8	Ligand-binding domain of nuclear hormone receptor.	Ligand-binding domain of nuclear hormone receptor.	0.561
NECAME_03201	NECAME_12319	W2T822	W2T3G0	Ligand-binding domain of nuclear hormone receptor.	Zinc finger, C4 type.	0.432
NECAME_12319	NECAME_03201	W2T3G0	W2T822	Zinc finger, C4 type.	Ligand-binding domain of nuclear hormone receptor.	0.432
NECAME_17683	NECAME_01552	W2TNF8	W2TSF0	Ligand-binding domain of nuclear hormone receptor.	Zinc finger, C4 type.	0.724
NECAME_17683	NECAME_01944	W2TNF8	W2TLZ0	Ligand-binding domain of nuclear hormone receptor.	Ligand-binding domain of nuclear hormone receptor.	0.561