STRINGSTRING
cgrA cgrA AO090010000582 AO090010000582 AO090103000410 AO090103000410 AO090103000065 AO090103000065 AO090103000037 AO090103000037 AO090011000872 AO090011000872 AO090011000771 AO090011000771 AO090011000468 AO090011000468 AO090011000424 AO090011000424 AO090038000597 AO090038000597 AO090038000502 AO090038000502 AO090038000383 AO090038000383 AO090038000368 AO090038000368 AO090038000341 AO090038000341 AO090038000305 AO090038000305 AO090038000291 AO090038000291 AO090311000002 AO090311000002 AO090020000342 AO090020000342 AO090020000128 AO090020000128 AO090020000071 AO090020000071 AO090020000020 AO090020000020 AO090113000085 AO090113000085 AO090120000499 AO090120000499 AO090120000495 AO090120000495 AO090120000346 AO090120000346 SPB1 SPB1 AO090124000091 AO090124000091 AO090124000075 AO090124000075 AO090701000669 AO090701000669 AO090701000145 AO090701000145 AO090701000118 AO090701000118 rrp36 rrp36 loc1 loc1 AO090102000594 AO090102000594 AO090102000512 AO090102000512 esf2 esf2 AO090102000115 AO090102000115 AO090102000114 AO090102000114 spb4 spb4 nop58 nop58 AO090012000621 AO090012000621 AO090012000583 AO090012000583 AO090012000434 AO090012000434 AO090012000197 AO090012000197 AO090012000101 AO090012000101 dbp7 dbp7 AO090026000616 AO090026000616 AO090026000510 AO090026000510 AO090026000495 AO090026000495 AO090026000462 AO090026000462 AO090026000431 AO090026000431 AO090026000345 AO090026000345 AO090026000256 AO090026000256 dbp9 dbp9 AO090672000008 AO090672000008 AO090023000965 AO090023000965 AO090023000955 AO090023000955 AO090023000859 AO090023000859 AO090023000825 AO090023000825 AO090023000821 AO090023000821 AO090023000818 AO090023000818 ytm1 ytm1 nop7 nop7 AO090023000641 AO090023000641 dbp4 dbp4 dbp10 dbp10 AO090023000315 AO090023000315 AO090023000181 AO090023000181 AO090003001348 AO090003001348 AO090003001155 AO090003001155 AO090003000924 AO090003000924 AO090003000855 AO090003000855 NAT10 NAT10 nop9 nop9 dbp8 dbp8 AO090003000478 AO090003000478 utp10 utp10 AO090003000282 AO090003000282 AO090003000101 AO090003000101 AO090001000712 AO090001000712 AO090001000711 AO090001000711 AO090001000666 AO090001000666 AO090001000653 AO090001000653 AO090001000615 AO090001000615 mak5 mak5 AO090001000458 AO090001000458 rrp3 rrp3 AO090001000427 AO090001000427 AO090001000418 AO090001000418 AO090005001612 AO090005001612 erb1 erb1 utp25 utp25 AO090005001519 AO090005001519 AO090005001471 AO090005001471 AO090005001291 AO090005001291 AO090005001275 AO090005001275 drs1 drs1 AO090005001224 AO090005001224 AO090005001148 AO090005001148 rok1 rok1 AO090005001072 AO090005001072 AO090005000896 AO090005000896 AO090005000879 AO090005000879 AO090005000878 AO090005000878 AO090005000833 AO090005000833 AO090005000831 AO090005000831 AO090005000824 AO090005000824 AO090005000668 AO090005000668 AO090005000605 AO090005000605 AO090005000411 AO090005000411 mss116 mss116 AO090005000129 AO090005000129 AO090005000107 AO090005000107 AO090009000673 AO090009000673 tif6 tif6 AO090009000640 AO090009000640 AO090009000567 AO090009000567 ipi1 ipi1 AO090009000402 AO090009000402 has1 has1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
cgrArRNA-processing protein cgrA; Involved in nucleolar integrity and required for processing of the pre-rRNA for the 60S ribosome subunit; Belongs to the CGR1 family. (114 aa)
AO090010000582Alpha-carbonic anhydrase domain-containing protein. (274 aa)
AO090103000410Uncharacterized protein. (380 aa)
AO090103000065RRM domain-containing protein. (561 aa)
AO090103000037Uncharacterized protein. (913 aa)
AO090011000872S4 RNA-binding domain-containing protein. (181 aa)
AO090011000771Uncharacterized protein. (824 aa)
AO090011000468MI domain-containing protein. (850 aa)
AO090011000424WD_REPEATS_REGION domain-containing protein. (541 aa)
AO090038000597Uncharacterized protein. (310 aa)
AO090038000502Uncharacterized protein. (228 aa)
AO090038000383PUM-HD domain-containing protein. (698 aa)
AO090038000368CP-type G domain-containing protein. (544 aa)
AO090038000341CBF domain-containing protein. (1121 aa)
AO090038000305Uncharacterized protein. (312 aa)
AO090038000291Sas10 domain-containing protein. (649 aa)
AO090311000002WD_REPEATS_REGION domain-containing protein. (943 aa)
AO090020000342WD_REPEATS_REGION domain-containing protein. (581 aa)
AO090020000128RRM domain-containing protein. (335 aa)
AO090020000071Uncharacterized protein. (262 aa)
AO090020000020U3 small nucleolar RNA-associated protein 22. (1110 aa)
AO090113000085PINc domain-containing protein. (191 aa)
AO090120000499Uncharacterized protein. (180 aa)
AO090120000495Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (247 aa)
AO090120000346Uncharacterized protein. (372 aa)
SPB1AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (802 aa)
AO090124000091WD_REPEATS_REGION domain-containing protein. (1017 aa)
AO090124000075Uncharacterized protein. (496 aa)
AO090701000669RTC domain-containing protein. (517 aa)
AO090701000145Protein MAK16; Belongs to the MAK16 family. (325 aa)
AO090701000118Uncharacterized protein. (1216 aa)
rrp36rRNA biogenesis protein rrp36; Component of the 90S pre-ribosome involved in the maturation of rRNAs. Required for early cleavages of the pre-RNAs in the 40S ribosomal subunit maturation pathway (By similarity). (352 aa)
loc160S ribosomal subunit assembly/export protein loc1; Required for efficient assembly and nuclear export of the 60S ribosomal subunit. (190 aa)
AO090102000594Uncharacterized protein. (296 aa)
AO090102000512WD_REPEATS_REGION domain-containing protein. (901 aa)
esf2Pre-rRNA-processing protein esf2; Involved in the small subunit (SSU) processome assembly and function, and in the 18S rRNA synthesis. Required for the early cleavages at sites A0, A1 and A2 (By similarity); Belongs to the ESF2/ABP1 family. (335 aa)
AO090102000115Nucleolar complex-associated protein 3; Required for synthesis of 60S ribosomal subunits and the transport of pre-ribosomes from the nucleoplasm to the cytoplasm. Belongs to the CBF/MAK21 family. (684 aa)
AO09010200011460S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (185 aa)
spb4ATP-dependent rRNA helicase spb4; ATP-binding RNA helicase involved in the biogenesis of 60S ribosomal subunits. Binds 90S pre-ribosomal particles and dissociates from pre-60S ribosomal particles after processing of 27SB pre-rRNA. Required for the normal formation of 18S rRNA through the processing of pre-rRNAs at sites A0, A1 and A2, and the normal formation of 25S and 5.8S rRNAs through the processing of pre-rRNAs at sites C1 and C2. (638 aa)
nop58Nucleolar protein 58; Required for pre-18S rRNA processing. May bind microtubules (By similarity); Belongs to the NOP5/NOP56 family. (578 aa)
AO090012000621Uncharacterized protein. (459 aa)
AO090012000583Brix domain-containing protein. (299 aa)
AO090012000434Uncharacterized protein. (317 aa)
AO090012000197Uncharacterized protein. (1827 aa)
AO090012000101Uncharacterized protein. (379 aa)
dbp7ATP-dependent RNA helicase dbp7; ATP-binding RNA helicase involved in the biogenesis of 60S ribosomal subunits and is required for the normal formation of 25S and 5.8S rRNAs. (760 aa)
AO090026000616Uncharacterized protein. (161 aa)
AO090026000510KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (359 aa)
AO090026000495Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (655 aa)
AO090026000462NUC173 domain-containing protein. (1284 aa)
AO090026000431Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family. (4913 aa)
AO090026000345WD_REPEATS_REGION domain-containing protein. (536 aa)
AO090026000256Bms1-type G domain-containing protein. (1172 aa)
dbp9ATP-dependent RNA helicase dbp9; ATP-binding RNA helicase involved in the biogenesis of 60S ribosomal subunits and is required for the normal formation of 25S and 5.8S rRNAs; Belongs to the DEAD box helicase family. DDX56/DBP9 subfamily. (605 aa)
AO090672000008U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (707 aa)
AO090023000965Uncharacterized protein. (726 aa)
AO090023000955RRM domain-containing protein. (464 aa)
AO090023000859Uncharacterized protein. (1080 aa)
AO090023000825Uncharacterized protein. (622 aa)
AO090023000821WD_REPEATS_REGION domain-containing protein. (981 aa)
AO090023000818Uncharacterized protein. (515 aa)
ytm1Ribosome biogenesis protein ytm1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (487 aa)
nop7Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (681 aa)
AO090023000641Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily. (559 aa)
dbp4ATP-dependent RNA helicase dbp4; ATP-dependent RNA helicase required for ribosome biogenesis. Involved in the release of U14 snoRNA in pre-ribosomal complexes. Required for pre-rRNA cleavage at site A2 (By similarity). (796 aa)
dbp10ATP-dependent RNA helicase dbp10; ATP-binding RNA helicase involved in the biogenesis of 60S ribosomal subunits and is required for the normal formation of 25S and 5.8S rRNAs; Belongs to the DEAD box helicase family. DDX54/DBP10 subfamily. (929 aa)
AO090023000315Uncharacterized protein. (402 aa)
AO090023000181AB hydrolase-1 domain-containing protein. (387 aa)
AO090003001348SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (751 aa)
AO090003001155Utp12 domain-containing protein. (441 aa)
AO090003000924Uncharacterized protein. (968 aa)
AO090003000855Uncharacterized protein. (825 aa)
NAT10RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1068 aa)
nop9Nucleolar protein 9; RNA-binding nucleolar protein required for pre-rRNA processing. Involved in production of 18S rRNA and assembly of small ribosomal subunit (By similarity); Belongs to the NOP9 family. (707 aa)
dbp8ATP-dependent RNA helicase dbp8; ATP-binding RNA helicase involved in 40S ribosomal subunit biogenesis and is required for the normal formation of 18S rRNAs through pre-rRNA processing at A0, A1 and A2 sites. Required for vegetative growth (By similarity); Belongs to the DEAD box helicase family. DDX49/DBP8 subfamily. (443 aa)
AO090003000478U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (284 aa)
utp10U3 small nucleolar RNA-associated protein 10; Involved in nucleolar processing of pre-18S ribosomal RNA. Involved in ribosome biosynthesis (By similarity). (1802 aa)
AO090003000282NUC153 domain-containing protein. (720 aa)
AO090003000101DRIM domain-containing protein. (2625 aa)
AO090001000712Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (126 aa)
AO090001000711WD_REPEATS_REGION domain-containing protein. (619 aa)
AO090001000666Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (427 aa)
AO090001000653NUC153 domain-containing protein. (719 aa)
AO090001000615Uncharacterized protein. (567 aa)
mak5ATP-dependent RNA helicase mak5; ATP-binding RNA helicase involved in the biogenesis of 60S ribosomal subunits and is required for the normal formation of 25S and 5.8S rRNAs; Belongs to the DEAD box helicase family. DDX24/MAK5 subfamily. (757 aa)
AO090001000458Uncharacterized protein. (527 aa)
rrp3ATP-dependent rRNA helicase rrp3; ATP-dependent rRNA helicase required for pre-ribosomal RNA processing. Involved in the maturation of the 35S-pre-rRNA and to its cleavage to mature 18S rRNA. (472 aa)
AO090001000427Brix domain-containing protein. (451 aa)
AO090001000418WD_REPEATS_REGION domain-containing protein. (448 aa)
AO090005001612Uncharacterized protein. (735 aa)
erb1Ribosome biogenesis protein erb1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (783 aa)
utp25U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2. (724 aa)
AO090005001519WD_REPEATS_REGION domain-containing protein. (849 aa)
AO090005001471Uncharacterized protein. (257 aa)
AO090005001291Nop domain-containing protein. (522 aa)
AO090005001275Uncharacterized protein. (393 aa)
drs1ATP-dependent RNA helicase drs1; ATP-binding RNA helicase involved in ribosome assembly. (820 aa)
AO090005001224Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family. (753 aa)
AO090005001148Uncharacterized protein; Belongs to the DEAD box helicase family. (656 aa)
rok1ATP-dependent RNA helicase rok1; ATP-dependent RNA helicase involved in 40S ribosomal subunit biogenesis. Required for the processing and cleavage of 35S pre-rRNA at sites A0, A1, and A2, leading to mature 18S rRNA. (725 aa)
AO090005001072Uncharacterized protein. (784 aa)
AO090005000896WD_REPEATS_REGION domain-containing protein. (515 aa)
AO090005000879F-box domain-containing protein. (357 aa)
AO090005000878Brix domain-containing protein. (336 aa)
AO090005000833WD_REPEATS_REGION domain-containing protein. (536 aa)
AO090005000831Uncharacterized protein. (312 aa)
AO090005000824WD_REPEATS_REGION domain-containing protein. (956 aa)
AO090005000668Brix domain-containing protein. (330 aa)
AO090005000605CBF domain-containing protein. (550 aa)
AO090005000411Uncharacterized protein. (396 aa)
mss116ATP-dependent RNA helicase mss116, mitochondrial; ATP-dependent RNA helicase required for mitochondrial splicing of group I and II introns. Also required for efficient mitochondrial translation (By similarity); Belongs to the DEAD box helicase family. DDX18/HAS1 subfamily. (633 aa)
AO090005000129Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (220 aa)
AO090005000107Uncharacterized protein. (217 aa)
AO090009000673Brix domain-containing protein. (432 aa)
tif6Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family. (247 aa)
AO090009000640Uncharacterized protein. (138 aa)
AO090009000567Uncharacterized protein. (1114 aa)
ipi1Pre-rRNA-processing protein ipi1; Component of the RIX1 complex required for processing of ITS2 sequences from 35S pre-rRNA. (369 aa)
AO090009000402Kri1_C domain-containing protein. (608 aa)
has1ATP-dependent RNA helicase has1; ATP-dependent RNA helicase involved in 40S ribosomal subunit biogenesis. Required for the processing and cleavage of 35S pre-rRNA at sites A0, A1, and A2, leading to mature 18S rRNA. (596 aa)
Your Current Organism:
Aspergillus oryzae
NCBI taxonomy Id: 510516
Other names: A. oryzae RIB40, Aspergillus oryzae RIB40
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