18 items (Aspergillus oryzae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AO090010000313	Uncharacterized protein. (611 aa)
	AO090103000296	Uncharacterized protein. (569 aa)
	AO090011000447	Uncharacterized protein. (618 aa)
	AO090011000043	Uncharacterized protein. (6885 aa)
	AO090038000487	Uncharacterized protein. (622 aa)
	AO090038000390	Uncharacterized protein. (5199 aa)
	AO090120000376	Uncharacterized protein. (589 aa)
	AO090701000311	Uncharacterized protein. (581 aa)
	AO090102000165	Uncharacterized protein. (561 aa)
	AO090102000033	Uncharacterized protein. (529 aa)
	AO090012000354	Uncharacterized protein. (577 aa)
	AO090012000255	Uncharacterized protein. (582 aa)
	AO090023000337	Uncharacterized protein. (371 aa)
	AO090003001398	Uncharacterized protein. (140 aa)
	AO090003001161	AKAP7_NLS domain-containing protein. (439 aa)
	AO090001000402	Carrier domain-containing protein. (2456 aa)
	AO090001000391	Uncharacterized protein. (171 aa)
	AO090001000262	Uncharacterized protein. (5308 aa)

Your Current Organism:

Aspergillus oryzae

NCBI taxonomy Id: 510516
Other names: A. oryzae RIB40, Aspergillus oryzae RIB40

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AO090003001161	AO090011000447	Q2UJL6	Q2U0G7	AKAP7_NLS domain-containing protein.	Uncharacterized protein.	0.473
AO090003001161	AO090012000255	Q2UJL6	Q2UDA2	AKAP7_NLS domain-containing protein.	Uncharacterized protein.	0.473
AO090003001161	AO090023000337	Q2UJL6	Q2UHR9	AKAP7_NLS domain-containing protein.	Uncharacterized protein.	0.645
AO090003001161	AO090038000487	Q2UJL6	Q2U2E4	AKAP7_NLS domain-containing protein.	Uncharacterized protein.	0.473
AO090011000043	AO090012000354	Q2U1G0	Q2UD21	Uncharacterized protein.	Uncharacterized protein.	0.698
AO090011000043	AO090701000311	Q2U1G0	Q2U8S5	Uncharacterized protein.	Uncharacterized protein.	0.698
AO090011000447	AO090003001161	Q2U0G7	Q2UJL6	Uncharacterized protein.	AKAP7_NLS domain-containing protein.	0.473
AO090011000447	AO090103000296	Q2U0G7	Q2TYD0	Uncharacterized protein.	Uncharacterized protein.	0.422
AO090012000255	AO090003001161	Q2UDA2	Q2UJL6	Uncharacterized protein.	AKAP7_NLS domain-containing protein.	0.473
AO090012000255	AO090103000296	Q2UDA2	Q2TYD0	Uncharacterized protein.	Uncharacterized protein.	0.432
AO090012000354	AO090011000043	Q2UD21	Q2U1G0	Uncharacterized protein.	Uncharacterized protein.	0.698
AO090023000337	AO090003001161	Q2UHR9	Q2UJL6	Uncharacterized protein.	AKAP7_NLS domain-containing protein.	0.645
AO090038000487	AO090003001161	Q2U2E4	Q2UJL6	Uncharacterized protein.	AKAP7_NLS domain-containing protein.	0.473
AO090038000487	AO090103000296	Q2U2E4	Q2TYD0	Uncharacterized protein.	Uncharacterized protein.	0.438
AO090103000296	AO090011000447	Q2TYD0	Q2U0G7	Uncharacterized protein.	Uncharacterized protein.	0.422
AO090103000296	AO090012000255	Q2TYD0	Q2UDA2	Uncharacterized protein.	Uncharacterized protein.	0.432
AO090103000296	AO090038000487	Q2TYD0	Q2U2E4	Uncharacterized protein.	Uncharacterized protein.	0.438
AO090701000311	AO090011000043	Q2U8S5	Q2U1G0	Uncharacterized protein.	Uncharacterized protein.	0.698