22 items (Aspergillus oryzae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AO090010000693	FAD_binding_3 domain-containing protein. (477 aa)
	AO090010000449	FAD_binding_3 domain-containing protein. (451 aa)
	AO090010000405	FAD_binding_3 domain-containing protein. (472 aa)
	AO090010000109	FAD_binding_3 domain-containing protein. (478 aa)
	AO090103000503	FAD_binding_2 domain-containing protein. (221 aa)
	AO090103000115	Uncharacterized protein. (371 aa)
	AO090011000681	Uncharacterized protein. (494 aa)
	AO090011000262	FAD_binding_3 domain-containing protein. (408 aa)
	AO090113000206	FAD_binding_3 domain-containing protein. (267 aa)
	AO090113000190	FAD_binding_3 domain-containing protein. (447 aa)
	AO090113000156	FAD_binding_3 domain-containing protein. (461 aa)
	AO090701000774	Uncharacterized protein. (248 aa)
	AO090701000697	FAD_binding_3 domain-containing protein. (454 aa)
	AO090701000561	FAD_binding_3 domain-containing protein. (405 aa)
	AO090102000210	FAD_binding_3 domain-containing protein. (318 aa)
	AO090102000031	FAD_binding_3 domain-containing protein. (357 aa)
	AO090023000921	FAD_binding_3 domain-containing protein. (332 aa)
	AO090003000219	Uncharacterized protein. (361 aa)
	AO090001000394	Uncharacterized protein. (756 aa)
	AO090005000334	FAD_binding_3 domain-containing protein. (441 aa)
	AO090005000024	FAD_binding_3 domain-containing protein. (418 aa)
	AO090009000103	FAD_binding_3 domain-containing protein. (222 aa)

Your Current Organism:

Aspergillus oryzae

NCBI taxonomy Id: 510516
Other names: A. oryzae RIB40, Aspergillus oryzae RIB40

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AO090001000394	AO090010000693	Q2UNE9	Q2TW61	Uncharacterized protein.	FAD_binding_3 domain-containing protein.	0.476
AO090001000394	AO090102000210	Q2UNE9	Q2UAW1	Uncharacterized protein.	FAD_binding_3 domain-containing protein.	0.501
AO090001000394	AO090103000503	Q2UNE9	Q2TXV6	Uncharacterized protein.	FAD_binding_2 domain-containing protein.	0.462
AO090001000394	AO090113000206	Q2UNE9	Q2U5B8	Uncharacterized protein.	FAD_binding_3 domain-containing protein.	0.472
AO090001000394	AO090701000697	Q2UNE9	Q2U7U5	Uncharacterized protein.	FAD_binding_3 domain-containing protein.	0.427
AO090003000219	AO090005000334	Q2ULY4	Q2USQ6	Uncharacterized protein.	FAD_binding_3 domain-containing protein.	0.440
AO090003000219	AO090009000103	Q2ULY4	Q2UV03	Uncharacterized protein.	FAD_binding_3 domain-containing protein.	0.471
AO090003000219	AO090010000449	Q2ULY4	Q2TWR8	Uncharacterized protein.	FAD_binding_3 domain-containing protein.	0.487
AO090003000219	AO090010000693	Q2ULY4	Q2TW61	Uncharacterized protein.	FAD_binding_3 domain-containing protein.	0.484
AO090003000219	AO090103000115	Q2ULY4	Q2TYT7	Uncharacterized protein.	Uncharacterized protein.	0.405
AO090003000219	AO090103000503	Q2ULY4	Q2TXV6	Uncharacterized protein.	FAD_binding_2 domain-containing protein.	0.493
AO090003000219	AO090113000206	Q2ULY4	Q2U5B8	Uncharacterized protein.	FAD_binding_3 domain-containing protein.	0.480
AO090003000219	AO090701000697	Q2ULY4	Q2U7U5	Uncharacterized protein.	FAD_binding_3 domain-containing protein.	0.435
AO090005000024	AO090009000103	Q2UTG7	Q2UV03	FAD_binding_3 domain-containing protein.	FAD_binding_3 domain-containing protein.	0.510
AO090005000024	AO090701000697	Q2UTG7	Q2U7U5	FAD_binding_3 domain-containing protein.	FAD_binding_3 domain-containing protein.	0.469
AO090005000334	AO090003000219	Q2USQ6	Q2ULY4	FAD_binding_3 domain-containing protein.	Uncharacterized protein.	0.440
AO090005000334	AO090102000031	Q2USQ6	Q2UBC0	FAD_binding_3 domain-containing protein.	FAD_binding_3 domain-containing protein.	0.438
AO090005000334	AO090102000210	Q2USQ6	Q2UAW1	FAD_binding_3 domain-containing protein.	FAD_binding_3 domain-containing protein.	0.412
AO090005000334	AO090103000503	Q2USQ6	Q2TXV6	FAD_binding_3 domain-containing protein.	FAD_binding_2 domain-containing protein.	0.422
AO090009000103	AO090003000219	Q2UV03	Q2ULY4	FAD_binding_3 domain-containing protein.	Uncharacterized protein.	0.471