25 items (Aspergillus oryzae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AO090206000030	Cytochrome c heme lyase; Links covalently the heme group to the apoprotein of cytochrome c. (324 aa)
	cox16	Cytochrome c oxidase assembly protein cox16, mitochondrial; Required for the assembly of the mitochondrial respiratory chain complex IV (CIV), also known as cytochrome c oxidase. May participate in merging the COX1 and COX2 assembly lines. Belongs to the COX16 family. (134 aa)
	AO090011000939	Uncharacterized protein. (189 aa)
	MZM1	Mitochondrial zinc maintenance protein 1, mitochondrial; Assembly factor required for Rieske Fe-S protein RIP1 incorporation into the cytochrome b-c1 (CIII) complex. Functions as a chaperone, binding to this subunit within the mitochondrial matrix and stabilizing it prior to its translocation and insertion into the late CIII dimeric intermediate within the mitochondrial inner membrane. Modulates the mitochondrial matrix zinc pool (By similarity). (114 aa)
	AO090038000623	zf-Mss51 domain-containing protein. (551 aa)
	AO090038000424	PEP_hydrolase domain-containing protein. (279 aa)
	AO090020000632	Uncharacterized protein; Belongs to the AAA ATPase family. (465 aa)
	AO090020000489	Uncharacterized protein. (117 aa)
	AO090020000180	Thioredoxin domain-containing protein. (322 aa)
	AO090020000116	SURF1-like protein; Probably involved in the biogenesis of the COX complex. Belongs to the SURF1 family. (321 aa)
	AO090701000040	FAD-binding FR-type domain-containing protein. (379 aa)
	AO090012000830	Uncharacterized protein; Belongs to the AAA ATPase family. (505 aa)
	AO090026000803	Uncharacterized protein; Belongs to the AAA ATPase family. (570 aa)
	cbp4	Assembly factor cbp4; Essential for the assembly of ubiquinol-cytochrome c reductase. It has a direct effect on the correct occurrence of the Rieske protein, core 4, core 5 and apocytochrome b (By similarity). Belongs to the CBP4 family. (116 aa)
	AO090023000998	Uncharacterized protein. (184 aa)
	AO090023000863	Cytochrome c heme lyase; Links covalently the heme group to the apoprotein of cytochrome c. (290 aa)
	AO090023000378	Ldi domain-containing protein. (278 aa)
	AO090023000377	Ldi domain-containing protein. (221 aa)
	AO090003000664	Uncharacterized protein. (579 aa)
	AO090003000251	Ldi domain-containing protein. (559 aa)
	AO090003000029	Uncharacterized protein. (135 aa)
	AO090001000304	HIG1 domain-containing protein. (261 aa)
	AO090005001560	Uncharacterized protein. (318 aa)
	AO090005001558	F-box domain-containing protein. (454 aa)
	AO090005001272	Uncharacterized protein. (115 aa)

Your Current Organism:

Aspergillus oryzae

NCBI taxonomy Id: 510516
Other names: A. oryzae RIB40, Aspergillus oryzae RIB40

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AO090001000304	AO090005001272	Q2UNM5	Q2UQF5	HIG1 domain-containing protein.	Uncharacterized protein.	0.869
AO090003000251	AO090005001272	Q2ULV6	Q2UQF5	Ldi domain-containing protein.	Uncharacterized protein.	0.472
AO090003000251	AO090020000116	Q2ULV6	Q2U516	Ldi domain-containing protein.	SURF1-like protein; Probably involved in the biogenesis of the COX complex. Belongs to the SURF1 family.	0.539
AO090005001272	AO090001000304	Q2UQF5	Q2UNM5	Uncharacterized protein.	HIG1 domain-containing protein.	0.869
AO090005001272	AO090003000251	Q2UQF5	Q2ULV6	Uncharacterized protein.	Ldi domain-containing protein.	0.472
AO090005001272	AO090020000116	Q2UQF5	Q2U516	Uncharacterized protein.	SURF1-like protein; Probably involved in the biogenesis of the COX complex. Belongs to the SURF1 family.	0.585
AO090005001272	AO090020000180	Q2UQF5	Q2U4W1	Uncharacterized protein.	Thioredoxin domain-containing protein.	0.698
AO090005001272	AO090020000489	Q2UQF5	Q2U454	Uncharacterized protein.	Uncharacterized protein.	0.408
AO090005001272	AO090023000377	Q2UQF5	Q2UHN5	Uncharacterized protein.	Ldi domain-containing protein.	0.472
AO090005001272	AO090023000378	Q2UQF5	Q2UHN4	Uncharacterized protein.	Ldi domain-containing protein.	0.472
AO090011000939	AO090012000830	Q2TZA0	Q2UBX1	Uncharacterized protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.559
AO090011000939	AO090020000632	Q2TZA0	Q2U3S9	Uncharacterized protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.404
AO090011000939	AO090026000803	Q2TZA0	Q2UE11	Uncharacterized protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.404
AO090011000939	AO090038000623	Q2TZA0	Q2U231	Uncharacterized protein.	zf-Mss51 domain-containing protein.	0.472
AO090011000939	MZM1	Q2TZA0	Q2U0V4	Uncharacterized protein.	Mitochondrial zinc maintenance protein 1, mitochondrial; Assembly factor required for Rieske Fe-S protein RIP1 incorporation into the cytochrome b-c1 (CIII) complex. Functions as a chaperone, binding to this subunit within the mitochondrial matrix and stabilizing it prior to its translocation and insertion into the late CIII dimeric intermediate within the mitochondrial inner membrane. Modulates the mitochondrial matrix zinc pool (By similarity).	0.403
AO090012000830	AO090011000939	Q2UBX1	Q2TZA0	Uncharacterized protein; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.559
AO090020000116	AO090003000251	Q2U516	Q2ULV6	SURF1-like protein; Probably involved in the biogenesis of the COX complex. Belongs to the SURF1 family.	Ldi domain-containing protein.	0.539
AO090020000116	AO090005001272	Q2U516	Q2UQF5	SURF1-like protein; Probably involved in the biogenesis of the COX complex. Belongs to the SURF1 family.	Uncharacterized protein.	0.585
AO090020000116	AO090020000180	Q2U516	Q2U4W1	SURF1-like protein; Probably involved in the biogenesis of the COX complex. Belongs to the SURF1 family.	Thioredoxin domain-containing protein.	0.599
AO090020000116	AO090023000377	Q2U516	Q2UHN5	SURF1-like protein; Probably involved in the biogenesis of the COX complex. Belongs to the SURF1 family.	Ldi domain-containing protein.	0.539