6 items (Aspergillus oryzae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	qutE	Catabolic 3-dehydroquinase; Is involved in the catabolism of quinate. Allows the utilization of quinate as carbon source via the beta-ketoadipate pathway; Belongs to the type-II 3-dehydroquinase family. (153 aa)
	AO090038000263	Shikimate_dh_N domain-containing protein. (349 aa)
	AO090103000429	AP_endonuc_2 domain-containing protein. (334 aa)
	AO090038000266	AP_endonuc_2 domain-containing protein. (366 aa)
	AO090103000431	Shikimate_dh_N domain-containing protein. (340 aa)
	AO090701000638	AP_endonuc_2 domain-containing protein. (384 aa)

Your Current Organism:

Aspergillus oryzae

NCBI taxonomy Id: 510516
Other names: A. oryzae RIB40, Aspergillus oryzae RIB40

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AO090038000263	AO090103000431	Q2U2Z0	Q2TY13	Shikimate_dh_N domain-containing protein.	Shikimate_dh_N domain-containing protein.	0.906
AO090038000263	qutE	Q2U2Z0	Q2U2Z2	Shikimate_dh_N domain-containing protein.	Catabolic 3-dehydroquinase; Is involved in the catabolism of quinate. Allows the utilization of quinate as carbon source via the beta-ketoadipate pathway; Belongs to the type-II 3-dehydroquinase family.	0.974
AO090038000266	AO090103000429	Q2U2Y7	Q2TY15	AP_endonuc_2 domain-containing protein.	AP_endonuc_2 domain-containing protein.	0.902
AO090038000266	AO090701000638	Q2U2Y7	Q2U7Z3	AP_endonuc_2 domain-containing protein.	AP_endonuc_2 domain-containing protein.	0.905
AO090103000429	AO090038000266	Q2TY15	Q2U2Y7	AP_endonuc_2 domain-containing protein.	AP_endonuc_2 domain-containing protein.	0.902
AO090103000429	AO090701000638	Q2TY15	Q2U7Z3	AP_endonuc_2 domain-containing protein.	AP_endonuc_2 domain-containing protein.	0.905
AO090103000431	AO090038000263	Q2TY13	Q2U2Z0	Shikimate_dh_N domain-containing protein.	Shikimate_dh_N domain-containing protein.	0.906
AO090103000431	qutE	Q2TY13	Q2U2Z2	Shikimate_dh_N domain-containing protein.	Catabolic 3-dehydroquinase; Is involved in the catabolism of quinate. Allows the utilization of quinate as carbon source via the beta-ketoadipate pathway; Belongs to the type-II 3-dehydroquinase family.	0.959
AO090701000638	AO090038000266	Q2U7Z3	Q2U2Y7	AP_endonuc_2 domain-containing protein.	AP_endonuc_2 domain-containing protein.	0.905
AO090701000638	AO090103000429	Q2U7Z3	Q2TY15	AP_endonuc_2 domain-containing protein.	AP_endonuc_2 domain-containing protein.	0.905
qutE	AO090038000263	Q2U2Z2	Q2U2Z0	Catabolic 3-dehydroquinase; Is involved in the catabolism of quinate. Allows the utilization of quinate as carbon source via the beta-ketoadipate pathway; Belongs to the type-II 3-dehydroquinase family.	Shikimate_dh_N domain-containing protein.	0.974
qutE	AO090103000431	Q2U2Z2	Q2TY13	Catabolic 3-dehydroquinase; Is involved in the catabolism of quinate. Allows the utilization of quinate as carbon source via the beta-ketoadipate pathway; Belongs to the type-II 3-dehydroquinase family.	Shikimate_dh_N domain-containing protein.	0.959