4 items (Aspergillus oryzae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AO090005000890	Uncharacterized protein. (153 aa)
	AO090001000498	Uncharacterized protein. (120 aa)
	AO090011000580	Uncharacterized protein. (116 aa)
	AO090005000888	Cytochrome c domain-containing protein. (316 aa)

Your Current Organism:

Aspergillus oryzae

NCBI taxonomy Id: 510516
Other names: A. oryzae RIB40, Aspergillus oryzae RIB40

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AO090001000498	AO090005000888	Q2UN56	Q2URC0	Uncharacterized protein.	Cytochrome c domain-containing protein.	0.998
AO090001000498	AO090005000890	Q2UN56	Q2URB9	Uncharacterized protein.	Uncharacterized protein.	0.984
AO090001000498	AO090011000580	Q2UN56	Q2U055	Uncharacterized protein.	Uncharacterized protein.	0.998
AO090005000888	AO090001000498	Q2URC0	Q2UN56	Cytochrome c domain-containing protein.	Uncharacterized protein.	0.998
AO090005000888	AO090005000890	Q2URC0	Q2URB9	Cytochrome c domain-containing protein.	Uncharacterized protein.	0.434
AO090005000888	AO090011000580	Q2URC0	Q2U055	Cytochrome c domain-containing protein.	Uncharacterized protein.	0.968
AO090005000890	AO090001000498	Q2URB9	Q2UN56	Uncharacterized protein.	Uncharacterized protein.	0.984
AO090005000890	AO090005000888	Q2URB9	Q2URC0	Uncharacterized protein.	Cytochrome c domain-containing protein.	0.434
AO090005000890	AO090011000580	Q2URB9	Q2U055	Uncharacterized protein.	Uncharacterized protein.	0.952
AO090011000580	AO090001000498	Q2U055	Q2UN56	Uncharacterized protein.	Uncharacterized protein.	0.998
AO090011000580	AO090005000888	Q2U055	Q2URC0	Uncharacterized protein.	Cytochrome c domain-containing protein.	0.968
AO090011000580	AO090005000890	Q2U055	Q2URB9	Uncharacterized protein.	Uncharacterized protein.	0.952