(11 nodes) Preribosome, small subunit precursor network (Aspergillus oryzae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AO090023000955	RRM domain-containing protein. (464 aa)
	AO090026000346	Bms1-type G domain-containing protein. (794 aa)
	efg1	rRNA-processing protein efg1; Involved in rRNA processing; Belongs to the EFG1 family. (320 aa)
	AO090124000075	Uncharacterized protein. (496 aa)
	AO090120000291	RIO domain-containing protein. (406 aa)
	AO090038000305	Uncharacterized protein. (312 aa)
	nop9	Nucleolar protein 9; RNA-binding nucleolar protein required for pre-rRNA processing. Involved in production of 18S rRNA and assembly of small ribosomal subunit (By similarity); Belongs to the NOP9 family. (707 aa)
	AO090003000101	DRIM domain-containing protein. (2625 aa)
	AO090005000605	CBF domain-containing protein. (550 aa)
	AO090009000594	Uncharacterized protein. (486 aa)
	AO090103000037	Uncharacterized protein. (913 aa)

Your Current Organism:

Aspergillus oryzae

NCBI taxonomy Id: 510516
Other names: A. oryzae RIB40, Aspergillus oryzae RIB40

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AO090003000101	AO090005000605	Q2UM83	Q2US18	DRIM domain-containing protein.	CBF domain-containing protein.	0.999
AO090003000101	AO090009000594	Q2UM83	Q2UTU0	DRIM domain-containing protein.	Uncharacterized protein.	0.489
AO090003000101	AO090023000955	Q2UM83	Q2UG71	DRIM domain-containing protein.	RRM domain-containing protein.	0.678
AO090003000101	AO090026000346	Q2UM83	Q2UF51	DRIM domain-containing protein.	Bms1-type G domain-containing protein.	0.625
AO090003000101	AO090038000305	Q2UM83	Q2U2V4	DRIM domain-containing protein.	Uncharacterized protein.	0.475
AO090003000101	AO090103000037	Q2UM83	Q2TZ02	DRIM domain-containing protein.	Uncharacterized protein.	0.999
AO090003000101	AO090124000075	Q2UM83	Q2U742	DRIM domain-containing protein.	Uncharacterized protein.	0.996
AO090005000605	AO090003000101	Q2US18	Q2UM83	CBF domain-containing protein.	DRIM domain-containing protein.	0.999
AO090005000605	AO090009000594	Q2US18	Q2UTU0	CBF domain-containing protein.	Uncharacterized protein.	0.772
AO090005000605	AO090023000955	Q2US18	Q2UG71	CBF domain-containing protein.	RRM domain-containing protein.	0.708
AO090005000605	AO090026000346	Q2US18	Q2UF51	CBF domain-containing protein.	Bms1-type G domain-containing protein.	0.806
AO090005000605	AO090038000305	Q2US18	Q2U2V4	CBF domain-containing protein.	Uncharacterized protein.	0.863
AO090005000605	AO090103000037	Q2US18	Q2TZ02	CBF domain-containing protein.	Uncharacterized protein.	0.999
AO090005000605	AO090120000291	Q2US18	Q2U6C8	CBF domain-containing protein.	RIO domain-containing protein.	0.672
AO090005000605	AO090124000075	Q2US18	Q2U742	CBF domain-containing protein.	Uncharacterized protein.	0.999
AO090005000605	nop9	Q2US18	Q2UKV0	CBF domain-containing protein.	Nucleolar protein 9; RNA-binding nucleolar protein required for pre-rRNA processing. Involved in production of 18S rRNA and assembly of small ribosomal subunit (By similarity); Belongs to the NOP9 family.	0.442
AO090009000594	AO090003000101	Q2UTU0	Q2UM83	Uncharacterized protein.	DRIM domain-containing protein.	0.489
AO090009000594	AO090005000605	Q2UTU0	Q2US18	Uncharacterized protein.	CBF domain-containing protein.	0.772
AO090009000594	AO090023000955	Q2UTU0	Q2UG71	Uncharacterized protein.	RRM domain-containing protein.	0.835
AO090009000594	AO090026000346	Q2UTU0	Q2UF51	Uncharacterized protein.	Bms1-type G domain-containing protein.	0.999