5 items (Aspergillus oryzae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AO090010000481	Uncharacterized protein. (197 aa)
	AO090011000580	Uncharacterized protein. (116 aa)
	AO090001000498	Uncharacterized protein. (120 aa)
	AO090005000890	Uncharacterized protein. (153 aa)
	AO090005000888	Cytochrome c domain-containing protein. (316 aa)

Your Current Organism:

Aspergillus oryzae

NCBI taxonomy Id: 510516
Other names: A. oryzae RIB40, Aspergillus oryzae RIB40

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AO090001000498	AO090005000888	Q2UN56	Q2URC0	Uncharacterized protein.	Cytochrome c domain-containing protein.	0.998
AO090001000498	AO090005000890	Q2UN56	Q2URB9	Uncharacterized protein.	Uncharacterized protein.	0.984
AO090001000498	AO090010000481	Q2UN56	Q2TWP1	Uncharacterized protein.	Uncharacterized protein.	0.997
AO090001000498	AO090011000580	Q2UN56	Q2U055	Uncharacterized protein.	Uncharacterized protein.	0.998
AO090005000888	AO090001000498	Q2URC0	Q2UN56	Cytochrome c domain-containing protein.	Uncharacterized protein.	0.998
AO090005000888	AO090005000890	Q2URC0	Q2URB9	Cytochrome c domain-containing protein.	Uncharacterized protein.	0.434
AO090005000888	AO090010000481	Q2URC0	Q2TWP1	Cytochrome c domain-containing protein.	Uncharacterized protein.	0.978
AO090005000888	AO090011000580	Q2URC0	Q2U055	Cytochrome c domain-containing protein.	Uncharacterized protein.	0.968
AO090005000890	AO090001000498	Q2URB9	Q2UN56	Uncharacterized protein.	Uncharacterized protein.	0.984
AO090005000890	AO090005000888	Q2URB9	Q2URC0	Uncharacterized protein.	Cytochrome c domain-containing protein.	0.434
AO090005000890	AO090010000481	Q2URB9	Q2TWP1	Uncharacterized protein.	Uncharacterized protein.	0.967
AO090005000890	AO090011000580	Q2URB9	Q2U055	Uncharacterized protein.	Uncharacterized protein.	0.952
AO090010000481	AO090001000498	Q2TWP1	Q2UN56	Uncharacterized protein.	Uncharacterized protein.	0.997
AO090010000481	AO090005000888	Q2TWP1	Q2URC0	Uncharacterized protein.	Cytochrome c domain-containing protein.	0.978
AO090010000481	AO090005000890	Q2TWP1	Q2URB9	Uncharacterized protein.	Uncharacterized protein.	0.967
AO090010000481	AO090011000580	Q2TWP1	Q2U055	Uncharacterized protein.	Uncharacterized protein.	0.831
AO090011000580	AO090001000498	Q2U055	Q2UN56	Uncharacterized protein.	Uncharacterized protein.	0.998
AO090011000580	AO090005000888	Q2U055	Q2URC0	Uncharacterized protein.	Cytochrome c domain-containing protein.	0.968
AO090011000580	AO090005000890	Q2U055	Q2URB9	Uncharacterized protein.	Uncharacterized protein.	0.952
AO090011000580	AO090010000481	Q2U055	Q2TWP1	Uncharacterized protein.	Uncharacterized protein.	0.831