(16 nodes) HAMP domain network (Alcaligenes faecalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALO40411.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (778 aa)
	ALO39935.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (845 aa)
	ALO39856.1	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (452 aa)
	ALO40480.1	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (569 aa)
	ALO39591.1	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (576 aa)
	ALO39590.1	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (551 aa)
	ALO39556.1	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (568 aa)
	ALO39554.1	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (468 aa)
	ALO39532.1	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (578 aa)
	ALO39277.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (466 aa)
	ALO39095.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (449 aa)
	ALO37795.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (481 aa)
	ALO40246.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (469 aa)
	ALO37109.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (434 aa)
	ALO37042.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (379 aa)
	ALO37017.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (485 aa)

Your Current Organism:

Alcaligenes faecalis

NCBI taxonomy Id: 511
Other names: A. faecalis, ATCC 8750, Achromobacter sp. ATCC8750, Alcaligenes sp. BP11, CIP 55.84, CIP 60.80, DSM 30030, IAM 12369, IFO 13111, JCM 20522, JCM 20663, NBRC 13111, NCAIM B.01104, NCIMB 8156, NCTC 11953

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALO37017.1	ALO37042.1	UZ73_01305	UZ73_01455	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.884
ALO37017.1	ALO39095.1	UZ73_01305	UZ73_12995	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.496
ALO37017.1	ALO39277.1	UZ73_01305	UZ73_13990	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.478
ALO37017.1	ALO39590.1	UZ73_01305	UZ73_15740	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.577
ALO37017.1	ALO39591.1	UZ73_01305	UZ73_15745	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.576
ALO37017.1	ALO39935.1	UZ73_01305	UZ73_17690	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.791
ALO37017.1	ALO40246.1	UZ73_01305	UZ73_03530	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.606
ALO37042.1	ALO37017.1	UZ73_01455	UZ73_01305	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.884
ALO37042.1	ALO37109.1	UZ73_01455	UZ73_01850	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.424
ALO37042.1	ALO39095.1	UZ73_01455	UZ73_12995	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.498
ALO37042.1	ALO39277.1	UZ73_01455	UZ73_13990	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.485
ALO37042.1	ALO39590.1	UZ73_01455	UZ73_15740	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.511
ALO37042.1	ALO39591.1	UZ73_01455	UZ73_15745	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.511
ALO37042.1	ALO39856.1	UZ73_01455	UZ73_17235	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.401
ALO37042.1	ALO39935.1	UZ73_01455	UZ73_17690	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.784
ALO37109.1	ALO37042.1	UZ73_01850	UZ73_01455	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.424
ALO37109.1	ALO37795.1	UZ73_01850	UZ73_05675	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.672
ALO37109.1	ALO39095.1	UZ73_01850	UZ73_12995	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.820
ALO37109.1	ALO39277.1	UZ73_01850	UZ73_13990	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.568
ALO37109.1	ALO39590.1	UZ73_01850	UZ73_15740	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.511

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