Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| cca | ygiM | b3056 | b3055 | Fused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows highest phosphatase activity in the presence of Ni(2+) and hydrolyzes pyrophosphate, canonical 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi. Displays a metal-independent [...] | SH3 domain protein. | 0.933 |
| glnE | ygiF | b3053 | b3054 | Fused deadenylyltransferase/adenylyltransferase for glutamine synthetase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase inactivates GlnA by covalent transfer of an adenylyl group from ATP to 'Tyr-398' of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N- terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signa [...] | Inorganic triphosphatase; Involved in the hydrolysis of the beta-gamma-phosphoanhydride linkage of triphosphate-containing substrates (inorganic or nucleoside- linked). Catalyzes the hydrolysis of inorganic triphosphate (PPPi), which could be cytotoxic because of its high affinity for calcium ion, thereby interfering with calcium signaling. It also hydrolyzes slowly thiamine triphosphate (ThTP). YgiF is a specific PPPase, but it contributes only marginally to the total PPPase activity in E.coli, where the main enzyme responsible for hydrolysis of PPPi is inorganic pyrophosphatase (PPase). | 0.873 |
| glnE | ygiM | b3053 | b3055 | Fused deadenylyltransferase/adenylyltransferase for glutamine synthetase; Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase inactivates GlnA by covalent transfer of an adenylyl group from ATP to 'Tyr-398' of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N- terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signa [...] | SH3 domain protein. | 0.586 |
| sbmA | yaiW | b0377 | b0378 | Peptide antibiotic transporter; Uptake of antimicrobial peptides. Required for the transport of microcin B17 (MccB17), microcin 25 (Mcc25) and proline-rich antimicrobial peptides into the cell. | Microcin Bac7 uptake protein; outer membrane surface-exposed lipoprotein. | 0.855 |
| yaiW | sbmA | b0378 | b0377 | Microcin Bac7 uptake protein; outer membrane surface-exposed lipoprotein. | Peptide antibiotic transporter; Uptake of antimicrobial peptides. Required for the transport of microcin B17 (MccB17), microcin 25 (Mcc25) and proline-rich antimicrobial peptides into the cell. | 0.855 |
| yaiW | yfeK | b0378 | b2419 | Microcin Bac7 uptake protein; outer membrane surface-exposed lipoprotein. | Uncharacterized protein. | 0.630 |
| yaiW | yfeS | b0378 | b2420 | Microcin Bac7 uptake protein; outer membrane surface-exposed lipoprotein. | WGR domain protein. | 0.645 |
| yaiW | yidR | b0378 | b3689 | Microcin Bac7 uptake protein; outer membrane surface-exposed lipoprotein. | DUF3748 family protein. | 0.510 |
| yfeK | yaiW | b2419 | b0378 | Uncharacterized protein. | Microcin Bac7 uptake protein; outer membrane surface-exposed lipoprotein. | 0.630 |
| yfeK | yfeS | b2419 | b2420 | Uncharacterized protein. | WGR domain protein. | 0.931 |
| yfeK | ygiM | b2419 | b3055 | Uncharacterized protein. | SH3 domain protein. | 0.888 |
| yfeK | yidQ | b2419 | b3688 | Uncharacterized protein. | DUF1375 family outer membrane protein; To E.coli YceK. | 0.537 |
| yfeK | yidR | b2419 | b3689 | Uncharacterized protein. | DUF3748 family protein. | 0.544 |
| yfeS | yaiW | b2420 | b0378 | WGR domain protein. | Microcin Bac7 uptake protein; outer membrane surface-exposed lipoprotein. | 0.645 |
| yfeS | yfeK | b2420 | b2419 | WGR domain protein. | Uncharacterized protein. | 0.931 |
| yfeS | ygiM | b2420 | b3055 | WGR domain protein. | SH3 domain protein. | 0.403 |
| yfeS | yidQ | b2420 | b3688 | WGR domain protein. | DUF1375 family outer membrane protein; To E.coli YceK. | 0.533 |
| yfeS | yidR | b2420 | b3689 | WGR domain protein. | DUF3748 family protein. | 0.624 |
| yggN | yghD | b2958 | b2968 | DUF2884 family putative periplasmic protein. | Putative membrane-anchored secretion pathway M-type protein; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of folded proteins across the outer membrane. | 0.739 |
| yggN | ygiM | b2958 | b3055 | DUF2884 family putative periplasmic protein. | SH3 domain protein. | 0.851 |
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