Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| bglJ | leuO | b4366 | b0076 | Bgl operon transcriptional activator; A crytic transcriptional activator. When its expression is induced it relieves H-NS repression of the bgl operon. Acts independently of transcription factor LeuO. | Global transcription factor; A global transcription factor. Activates transcription of the 9 following operons; yjjQ-bglJ, yjjP, acrEF, ybdO, yjcRQP, casABCDE12, rhsD-ybbC, fepE and gltF, in most cases it probably interferes with silencing by H-NS and activates transcription. Represses transcription of the 3 following operons; uxaCA, sdaCB and btsT. H-NS repression of the bgl operon, leading to the ability to metabolize some beta- glucosides. It also directly activates the bgl operon. Activation is H- NS and BglJ-RcsB independent. | 0.920 |
| bglJ | sfsB | b4366 | b3188 | Bgl operon transcriptional activator; A crytic transcriptional activator. When its expression is induced it relieves H-NS repression of the bgl operon. Acts independently of transcription factor LeuO. | malPQ operon transcriptional activator; This protein is involved in positive regulation of the metabolism of sugars. | 0.462 |
| bglJ | yecT | b4366 | b1877 | Bgl operon transcriptional activator; A crytic transcriptional activator. When its expression is induced it relieves H-NS repression of the bgl operon. Acts independently of transcription factor LeuO. | Uncharacterized protein; To R.meliloti R02472. | 0.401 |
| bglJ | ygiZ | b4366 | b3027 | Bgl operon transcriptional activator; A crytic transcriptional activator. When its expression is induced it relieves H-NS repression of the bgl operon. Acts independently of transcription factor LeuO. | Inner membrane protein. | 0.812 |
| bglJ | yjjQ | b4366 | b4365 | Bgl operon transcriptional activator; A crytic transcriptional activator. When its expression is induced it relieves H-NS repression of the bgl operon. Acts independently of transcription factor LeuO. | Putative regulator. | 0.977 |
| bglJ | ynjI | b4366 | b1762 | Bgl operon transcriptional activator; A crytic transcriptional activator. When its expression is induced it relieves H-NS repression of the bgl operon. Acts independently of transcription factor LeuO. | Inner membrane protein. | 0.529 |
| bglJ | yqhG | b4366 | b3013 | Bgl operon transcriptional activator; A crytic transcriptional activator. When its expression is induced it relieves H-NS repression of the bgl operon. Acts independently of transcription factor LeuO. | DUF3828 family putative periplasmic protein. | 0.519 |
| leuO | bglJ | b0076 | b4366 | Global transcription factor; A global transcription factor. Activates transcription of the 9 following operons; yjjQ-bglJ, yjjP, acrEF, ybdO, yjcRQP, casABCDE12, rhsD-ybbC, fepE and gltF, in most cases it probably interferes with silencing by H-NS and activates transcription. Represses transcription of the 3 following operons; uxaCA, sdaCB and btsT. H-NS repression of the bgl operon, leading to the ability to metabolize some beta- glucosides. It also directly activates the bgl operon. Activation is H- NS and BglJ-RcsB independent. | Bgl operon transcriptional activator; A crytic transcriptional activator. When its expression is induced it relieves H-NS repression of the bgl operon. Acts independently of transcription factor LeuO. | 0.920 |
| leuO | yjjQ | b0076 | b4365 | Global transcription factor; A global transcription factor. Activates transcription of the 9 following operons; yjjQ-bglJ, yjjP, acrEF, ybdO, yjcRQP, casABCDE12, rhsD-ybbC, fepE and gltF, in most cases it probably interferes with silencing by H-NS and activates transcription. Represses transcription of the 3 following operons; uxaCA, sdaCB and btsT. H-NS repression of the bgl operon, leading to the ability to metabolize some beta- glucosides. It also directly activates the bgl operon. Activation is H- NS and BglJ-RcsB independent. | Putative regulator. | 0.743 |
| rhsB | sfsB | b3482 | b3188 | Rhs protein with DUF4329 family putative toxin domain; Rhs elements have a nonessential function. They may play an important role in the natural ecology of the cell; Belongs to the RHS family. | malPQ operon transcriptional activator; This protein is involved in positive regulation of the metabolism of sugars. | 0.473 |
| rhsB | ybfB | b3482 | b0702 | Rhs protein with DUF4329 family putative toxin domain; Rhs elements have a nonessential function. They may play an important role in the natural ecology of the cell; Belongs to the RHS family. | Putative membrane protein. | 0.429 |
| rhsB | yecT | b3482 | b1877 | Rhs protein with DUF4329 family putative toxin domain; Rhs elements have a nonessential function. They may play an important role in the natural ecology of the cell; Belongs to the RHS family. | Uncharacterized protein; To R.meliloti R02472. | 0.559 |
| rhsB | ygiZ | b3482 | b3027 | Rhs protein with DUF4329 family putative toxin domain; Rhs elements have a nonessential function. They may play an important role in the natural ecology of the cell; Belongs to the RHS family. | Inner membrane protein. | 0.660 |
| rhsB | yhhH | b3482 | b3483 | Rhs protein with DUF4329 family putative toxin domain; Rhs elements have a nonessential function. They may play an important role in the natural ecology of the cell; Belongs to the RHS family. | Putative NTF2 fold immunity protein for polymorphic toxin RhsB. | 0.942 |
| rhsB | yibG | b3482 | b3596 | Rhs protein with DUF4329 family putative toxin domain; Rhs elements have a nonessential function. They may play an important role in the natural ecology of the cell; Belongs to the RHS family. | Uncharacterized protein YibG; Rhs-family protein. | 0.424 |
| rhsB | ynjI | b3482 | b1762 | Rhs protein with DUF4329 family putative toxin domain; Rhs elements have a nonessential function. They may play an important role in the natural ecology of the cell; Belongs to the RHS family. | Inner membrane protein. | 0.709 |
| sfsB | bglJ | b3188 | b4366 | malPQ operon transcriptional activator; This protein is involved in positive regulation of the metabolism of sugars. | Bgl operon transcriptional activator; A crytic transcriptional activator. When its expression is induced it relieves H-NS repression of the bgl operon. Acts independently of transcription factor LeuO. | 0.462 |
| sfsB | rhsB | b3188 | b3482 | malPQ operon transcriptional activator; This protein is involved in positive regulation of the metabolism of sugars. | Rhs protein with DUF4329 family putative toxin domain; Rhs elements have a nonessential function. They may play an important role in the natural ecology of the cell; Belongs to the RHS family. | 0.473 |
| sfsB | yecT | b3188 | b1877 | malPQ operon transcriptional activator; This protein is involved in positive regulation of the metabolism of sugars. | Uncharacterized protein; To R.meliloti R02472. | 0.650 |
| sfsB | ygiZ | b3188 | b3027 | malPQ operon transcriptional activator; This protein is involved in positive regulation of the metabolism of sugars. | Inner membrane protein. | 0.531 |
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