STRINGSTRING
ybdM ybdM ybdN ybdN ybdO ybdO ycfZ ycfZ ymfA ymfA ychE ychE ycjG ycjG mpaA mpaA ycjY ycjY pgrR pgrR ydfV ydfV yedI yedI yejG yejG yqiI yqiI yhcC yhcC yhcF yhcF yhcG yhcG ytfL ytfL yigE yigE ymiA ymiA yciX yciX yciY yciY
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ybdMSpo0J family protein, ParB-like nuclease domain. (209 aa)
ybdNPAPS reductase-like domain protein. (406 aa)
ybdOPutative transcriptional regulator LYSR-type; Protein involved in transcription and regulation of transcription, DNA-dependent; Belongs to the LysR transcriptional regulatory family. (300 aa)
ycfZInner membrane protein. (262 aa)
ymfADUF3592 family inner membrane protein. (153 aa)
ychEUPF0056 family inner membrane protein; Putative channel protein. (215 aa)
ycjGL-Ala-D/L-Glu epimerase; Catalyzes the epimerization of L-Ala-D-Glu to L-Ala-L-Glu and has a role in the recycling of the murein peptide, of which L-Ala-D-Glu is a component. Is also able to catalyze the reverse reaction and the epimerization of all the L-Ala-X dipeptides, except L-Ala-L-Arg, L-Ala- L-Lys and L-Ala-L-Pro. Is also active with L-Gly-L-Glu, L-Phe-L-Glu, and L-Ser-L-Glu, but not with L-Glu-L-Glu, L-Lys-L-Glu, L-Pro-L-Glu, L- Lys-L-Ala, or D-Ala-D-Ala; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (321 aa)
mpaAMurein peptide amidase A; Involved in muropeptide degradation. Catalyzes the hydrolysis of the gamma-D-glutamyl-diaminopimelic acid (gamma-D-Glu-Dap) amide bond in the murein tripeptide L-alanyl-gamma-D-glutamyl-meso- diaminopimelic acid, leading to the formation of L-Ala-gamma-D-Glu and Dap. Has weak activity with L-Ala- gamma-D-Glu-L-Lys, MurNAc-tripeptide and gamma-D-Glu-meso-Dap. Cannot hydrolyze murein tetrapeptide ; Belongs to the peptidase M14 family. (242 aa)
ycjYUncharacterized protein YcjY; Pseudogene fragment, MhpC family. (306 aa)
pgrRMurein peptide degradation regulator; Regulates the expression of genes involved in peptidoglycan (PG) degradation. Could play a role in switch control between recycling and degradation of PG peptides. Negatively regulates the expression of the ycjY-ymjD-ymjC-mpaA operon by binding to the PgrR-box. In addition, other genes are predicted to be under the control of PgrR, including genes related to membrane formation and function. (299 aa)
ydfVQin prophage; uncharacterized protein. (101 aa)
yedIDUF808 family inner membrane protein. (305 aa)
yejGUncharacterized protein. (114 aa)
yqiIFimbrial protein; May be involved in a fimbrial system chaperoned by YqiH and exported by YqiG. (354 aa)
yhcCPutative Fe-S oxidoreductase, Radical SAM superfamily protein; In vitro, can cleave S-adenosyl-L-methionine into methionine and 5'-deoxyadenosine (AdoH); Belongs to the radical SAM superfamily. (309 aa)
yhcFPutative transcriptional regulator; Protein involved in transcription and regulation of transcription, DNA-dependent; To E.coli GltF. (238 aa)
yhcGDUF1016 family protein in the PD-(D/E)XK nuclease superfamily; May be a nuclease involved in DNA recombination and repair. (375 aa)
ytfLUPF0053 family inner membrane protein; Putative transport protein. (447 aa)
yigEDUF2233 family protein. (254 aa)
ymiAUncharacterized protein. (54 aa)
yciXUncharacterized protein. (55 aa)
yciYUncharacterized protein; Belongs to the YciY family. (57 aa)
Your Current Organism:
Escherichia coli K12
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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